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BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
SMEVFQNHFEPGVYVCAKCGYELFSSRSKYAHSSPWPAFTETIHADSVAKRPEHNRSEALKVSCGKCGNGLGHEFLNDGP
KPGQSRFSIFSSSLKFVPKGKETSA

The query sequence (length=105) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 3mao:A 105 105 1.0000 1.0000 1.0000 1.22e-75
2 6q9v:B 145 102 0.3333 0.2414 0.3431 2.48e-17 6q9v:A, 6qa0:A, 6qa0:B
3 2k8d:A 151 100 0.3048 0.2119 0.3200 5.70e-16
4 3hch:A 145 96 0.3619 0.2621 0.3958 7.74e-13 3hch:B
5 6sym:A 135 88 0.3143 0.2444 0.3750 1.49e-12 6sym:B
6 6tr8:A 136 96 0.2952 0.2279 0.3229 2.25e-11
7 3hci:A 153 101 0.3333 0.2288 0.3465 1.34e-10 3hci:B, 3hcj:A, 3hcj:B
8 3cxk:A 131 92 0.2857 0.2290 0.3261 1.67e-10 3cez:A, 3cez:B, 3cxk:B
9 7e43:B 324 89 0.3238 0.1049 0.3820 7.49e-10 7e43:A
10 3e0m:C 313 104 0.3238 0.1086 0.3269 1.93e-07 3e0m:A, 3e0m:B
11 6z1p:BL 181 106 0.2857 0.1657 0.2830 7.88e-05
12 8iew:A 498 28 0.1048 0.0221 0.3929 1.8 8inb:A
13 7ok0:B 1109 37 0.1143 0.0108 0.3243 2.3 7oq4:B, 7oqy:B
14 7ooc:O 87 35 0.1238 0.1494 0.3714 2.5 7p6z:O, 7pah:O, 7pai:O, 7paj:O, 7pak:O, 7pal:O, 7pam:O, 7pan:O, 7pao:O, 7paq:O, 7par:O, 7pas:O, 7ph9:O, 7pha:O, 7phb:O, 7phc:O, 7pi8:O, 7pi9:O, 7pia:O, 7pib:O, 7pic:O, 7pio:O, 7pip:O, 7piq:O, 7pir:O, 7pis:O, 7pit:O
15 7l7x:AAA 395 17 0.0952 0.0253 0.5882 2.8 7l7x:BBB
16 6hiv:BV 155 46 0.1619 0.1097 0.3696 3.5 6hix:BV
17 7e6q:A 394 38 0.1238 0.0330 0.3421 3.5 7e6q:B, 4qn5:A, 4qn5:B, 3sal:A, 3sal:B, 3san:A, 3san:B, 3ti8:A, 3ti8:B
18 5hug:A 388 52 0.1619 0.0438 0.3269 4.0 3b7e:A, 3b7e:B, 4b7j:A, 4b7m:A, 4b7m:B, 4b7n:A, 4b7q:A, 4b7q:B, 4b7q:C, 4b7q:D, 4b7r:A, 4b7r:B, 4b7r:C, 4b7r:D, 3beq:A, 3beq:B, 3ckz:A, 3cl0:A, 3cl2:A, 3cl2:B, 3cl2:C, 3cl2:D, 3cl2:E, 3cl2:F, 3cl2:G, 3cl2:H, 3cye:A, 3cye:B, 6d96:A, 6d96:B, 6d96:C, 6d96:D, 6d96:E, 6d96:F, 6d96:G, 6d96:H, 6g01:A, 6g01:B, 6g02:A, 6g02:B, 6hp0:C, 6hp0:A, 6hp0:B, 6hp0:D, 2hty:A, 2hty:B, 2hty:C, 2hty:D, 2hty:E, 2hty:F, 2hty:G, 2hty:H, 2hu0:B, 2hu4:A, 2hu4:B, 2hu4:C, 2hu4:D, 2hu4:E, 2hu4:F, 2hu4:G, 2hu4:H, 6lxi:A, 6lxi:B, 6lxk:A, 6lxk:B, 6lxk:C, 6lxk:D, 3nss:A, 3nss:B, 5nwe:A, 5nwe:B, 5nwe:C, 5nwe:D, 5nz4:A, 5nz4:B, 5nze:A, 5nze:B, 5nzf:A, 5nzf:B, 5nzf:C, 5nzf:D, 5nzn:A, 5nzn:B, 5nzn:C, 5nzn:D, 6q23:C, 6q23:B, 6q23:A, 6q23:D, 4qnp:A, 4qnp:B, 7s0i:A, 3ti3:A, 3ti3:B, 3ti4:A, 3ti4:B, 3ti5:A, 3ti5:B, 3ti6:A, 3ti6:B
19 5ydj:B 538 26 0.0952 0.0186 0.3846 7.4 6ary:A, 6ary:B
20 4br5:A 422 42 0.1333 0.0332 0.3333 8.0 4bqz:A, 4br0:A, 4br2:A, 4cd1:A, 4cd3:A, 3cj7:A, 3cj9:A, 3cja:A
21 8c3a:AH 112 54 0.1429 0.1339 0.2778 9.4 8c3a:CB, 8cq7:AH, 8cq7:CB, 8cqw:AH, 8cqw:CB, 8cre:AH, 8cre:CB, 8oeq:AH, 8oeq:CB, 7pzy:AH, 7q08:AH, 7q0f:AH, 7q0p:AH, 7q0r:AH, 8q5i:AH

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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