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BioLiP
>protein
SMERKRWECPALPQGWEREEVPRRSGLSAGHRDVFYYSPSGKKFRSKPQLARYLGGSMDLSTFDFRTGKMLM

The query sequence (length=72) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 6ccg:A 72 72 1.0000 1.0000 1.0000 1.58e-49 6cc8:A, 6cc8:B, 6ccg:B, 6ceu:A, 6ceu:B, 6cev:A, 6cev:B
2 7mwm:A 74 67 0.6944 0.6757 0.7463 2.70e-34 6c1a:A, 6c1a:B, 6c1a:E, 6c1a:F, 6c1t:A, 6c1t:D, 6c1u:A, 6c1u:B, 6c1u:E, 6c1u:F, 6c1v:A, 6c1v:B, 6c1v:E, 6c1v:F, 6c2f:A, 6c2f:D, 6c2f:G, 6c2f:J, 6c2f:M, 6c2f:P, 6cnp:A, 6cnp:B, 6cnq:A, 6cnq:B, 7mwk:A, 7mwk:B, 7mwm:B, 7ray:A
3 2ky8:A 70 66 0.6944 0.7143 0.7576 1.18e-33
4 1ig4:A 75 64 0.4444 0.4267 0.5000 1.15e-18 6d1t:A
5 6ogj:B 82 63 0.3889 0.3415 0.4444 1.53e-11 5bt2:A, 6c1y:A, 6c1y:B, 3c2i:A, 6ogj:A, 6ogk:A, 6yww:A
6 2moe:A 71 61 0.4028 0.4085 0.4754 3.29e-09 4lg7:A
7 3vxv:A 65 57 0.3889 0.4308 0.4912 5.17e-09 3vxx:A, 3vyb:A, 3vyq:A, 3vyq:D
8 7fef:A 48 44 0.2917 0.4375 0.4773 4.31e-07
9 7bwc:A 464 68 0.2639 0.0409 0.2794 0.028
10 7fhj:B 107 51 0.2222 0.1495 0.3137 0.073 7mwh:B, 7mwl:B
11 1r5a:A 214 38 0.1806 0.0607 0.3421 0.21
12 8any:r 162 31 0.2083 0.0926 0.4839 1.5 7a5f:r3, 7a5g:r3, 7a5h:r, 7a5i:r3, 7a5j:r, 7a5k:r3, 6i9r:r, 3j7y:r, 3j9m:r, 8k2a:SR, 8k2b:SR, 7l08:r, 7l20:r, 6nu2:r, 6nu3:r, 7o9k:r, 7o9m:r, 7odr:r, 7ods:r, 7odt:r, 7of0:r, 7of2:r, 7of3:r, 7of4:r, 7of5:r, 7of6:r, 7of7:r, 7og4:r, 7oi6:r, 7oi7:r, 7oi8:r, 7oi9:r, 7oia:r, 7oib:r, 7oic:r, 7oid:r, 7oie:r, 8oir:Bh, 8oit:Bh, 5ool:r, 5oom:r, 7pd3:r, 8pk0:r, 7po4:r, 7qh6:r, 7qh7:r, 7qi4:r, 7qi5:r, 7qi6:r, 8qsj:r, 8qu5:r, 6vlz:r, 6vmi:r, 8xt0:SR, 8xt1:SR, 8xt2:SR, 8xt3:SR, 6zm5:r, 6zm6:r, 6zs9:r, 6zsa:r, 6zsb:r, 6zsc:r, 6zsd:r, 6zse:r, 6zsg:r
13 3kfu:F 447 43 0.2083 0.0336 0.3488 1.6 3kfu:I
14 7oq6:A 399 36 0.1667 0.0301 0.3333 1.8 7oq6:B
15 5tth:B 621 31 0.1528 0.0177 0.3548 2.2 6d14:B, 7exp:B, 4ipe:B, 4iyn:B, 4j0b:B, 5tvu:B, 5tvw:B, 5tvx:B
16 5tth:A 671 31 0.1528 0.0164 0.3548 2.2 6d14:A, 7exp:A, 4ipe:A, 4ivg:A, 4iyn:A, 4j0b:A, 4mli:A, 4mli:C, 4mls:A, 5tvu:A, 5tvw:A, 5tvx:A
17 6hpd:A 955 41 0.1944 0.0147 0.3415 2.5
18 9azo:A 315 62 0.2639 0.0603 0.3065 3.2 9azo:B, 9azo:C, 9azo:D, 9azo:E, 9azo:F
19 4bqn:A 311 61 0.1944 0.0450 0.2295 3.9 4bqn:B, 4bqo:A, 4bqo:B
20 5a0y:F 248 52 0.2361 0.0685 0.3269 3.9 5a0y:C, 5a8k:C, 5a8k:F, 7b2h:C, 7b2h:F, 5g0r:F, 5g0r:C, 1hbm:C, 1hbm:F, 1hbn:C, 1hbn:F, 1hbo:C, 1hbo:F, 1hbu:C, 1hbu:F, 3m1v:F, 3m1v:C, 3m2r:F, 3m2r:C, 3m2u:F, 3m2u:C, 3m2v:F, 3m2v:C, 3m30:F, 3m30:C, 3m32:F, 3m32:C, 1mro:F, 1mro:C, 3pot:F, 3pot:C, 7suc:c, 7suc:C, 7sxm:F, 7sxm:C
21 5ktc:A 187 29 0.1389 0.0535 0.3448 9.1 5ktd:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218