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BioLiP
>protein
SMEMDEKDFAADSWSLAVDSSFLQQHKKEVMKQQDVIYELIQTELHHVRTLKIMTRLFRTGMLEELHLEPGVVQGLFPCV
DELSDIHTRFLSQLLERRRQALCPGSTRNFVIHRLGDLLISQFSGPSAEQMCKTYSEFCSRHSKALKLYKELYARDKRFQ
QFIRKVTRPAVLKRHGVQECILLVTQRITKYPLLISRILQHSHGIEEERQDLTTALGLVKELLSNVDEGIYQLEKGARLQ
EIYNR

The query sequence (length=245) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 7g82:B 245 245 1.0000 1.0000 1.0000 0.0 7g85:B, 7g86:B, 7g88:B, 7g89:B, 7g8b:B, 7g8d:B, 7g8e:B, 7g8g:B, 7g8h:B, 7g8k:B, 7g8l:B, 7g8o:B, 7g8q:B, 7g8t:B, 7g8u:B, 7g8z:B, 7g94:B, 7g95:B, 7g96:B, 7g98:B, 7g99:B, 7g9a:B, 7g9b:B, 7g9c:B, 7g9d:B, 7g9e:B, 7g9f:B, 7g9g:B, 7g9h:B
2 5hzi:A 476 131 0.1510 0.0777 0.2824 1.58e-09 5djt:A, 5dju:A, 5dju:C, 5efw:A, 5hzi:B, 5hzj:A, 5hzj:B, 5hzk:B, 5hzk:D, 7pgx:AAA, 7pgy:AAA, 7pgz:AAA, 7ph0:AAA, 2v0u:A, 2v0w:A, 2v1a:A, 2v1b:A
3 5hzi:A 476 93 0.1184 0.0609 0.3118 0.14 5djt:A, 5dju:A, 5dju:C, 5efw:A, 5hzi:B, 5hzj:A, 5hzj:B, 5hzk:B, 5hzk:D, 7pgx:AAA, 7pgy:AAA, 7pgz:AAA, 7ph0:AAA, 2v0u:A, 2v0w:A, 2v1a:A, 2v1b:A
4 8tua:A 1329 209 0.2327 0.0429 0.2727 4.81e-09 5d3x:A, 5d3x:B, 5d3y:A, 5d3y:B, 5fi0:A, 5fi0:C, 5fi0:E, 5fi0:G
5 6nf1:A 550 192 0.1755 0.0782 0.2240 0.001 3bji:A, 3bji:B, 3ky9:A, 3ky9:B, 6new:A, 6nfa:A, 2vrw:B
6 5kcv:A 353 63 0.0939 0.0652 0.3651 0.56
7 8gdl:A 355 84 0.0980 0.0676 0.2857 1.5 8gdl:B
8 4v8p:BN 180 75 0.0980 0.1333 0.3200 2.9 4v8p:CN, 4v8p:EN, 4v8p:GN
9 5o6y:A 214 34 0.0449 0.0514 0.3235 3.7 5o6y:B, 5o6y:C, 5o6y:D
10 5b49:B 247 62 0.0898 0.0891 0.3548 5.4 5b49:A, 5b4a:A, 5b4a:B, 5b4b:A, 5b4b:B, 5b4c:A, 5b4c:B
11 8dvv:A 3886 108 0.1020 0.0064 0.2315 5.9 8dvv:B, 8dvv:C, 8dvv:D
12 8dty:A 4004 108 0.1020 0.0062 0.2315 6.0 8dty:B, 8dty:C, 8dty:D
13 6wou:A 3921 108 0.1020 0.0064 0.2315 6.3 6wou:B, 6wou:C, 6wou:D, 6wov:A, 6wov:B, 6wov:C, 6wov:D
14 2yku:A 433 52 0.0612 0.0346 0.2885 9.3 4ao4:A, 4ao4:B, 4ao4:C, 2yku:B, 2yku:C, 2ykv:A, 2ykv:B, 2ykv:C, 2ykx:A, 2ykx:B, 2ykx:C, 2yky:A, 2yky:B, 2yky:C

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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