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TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
SMDVFWFLPTHGDGHYLGTTQGARPVTLNYLKQVAQAADSLGYHGVLIPTGRSCEDSWVIASALVPLTERLRYLVAIRPG
IISPTVSARMAATLDRLSNGRLLINVVTGGDPDENRGDGSFLSHSERYEVTDEFLKIWRRVLQGEAVDFEGKHLKVQNAK
ALYPPVQKPYPPLYFGGSSDAAHDLAAEQVDVYLTWGEPPAAVAEKLADVRERAARHGRKVKFGIRLHVIVRETAEEAWK
AADKLIEHISDNLEIAPNLWAGVGLVRGGSGTALVGDPQQVAARIKEYADLGIESFIFSGYPHLEEAYRFAELVFPLLPE
PYASLAG

The query sequence (length=327) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 7k64:H 348 327 1.0000 0.9397 1.0000 0.0 7jyb:B, 7jyb:D, 7jyb:G, 7k14:H, 7k64:D, 7k64:G
2 7jw9:A 378 357 1.0000 0.8651 0.9160 0.0 7jw9:B, 7jw9:C, 7jw9:D, 7jyb:A, 7jyb:C, 7jyb:E, 7k14:A, 7k14:B, 7k14:C, 7k14:D, 7k14:E, 7k14:G, 7k64:A, 7k64:C, 7k64:E
3 3b9o:A 433 242 0.1927 0.1455 0.2603 3.05e-16 3b9o:B
4 5wan:A 341 275 0.2263 0.2170 0.2691 5.32e-14 6sgg:AAA, 6sgl:AAA, 6sgm:AAA, 6sgn:AAA, 6tee:AAA, 6tef:AAA, 6teg:AAA
5 1yw1:A 393 369 0.2875 0.2392 0.2547 4.16e-11
6 5w4y:A 450 281 0.1896 0.1378 0.2206 1.00e-10 5w4y:B, 5w4z:A, 5w4z:B
7 6asl:A 430 285 0.2232 0.1698 0.2561 2.74e-10
8 7cza:A 419 324 0.2324 0.1814 0.2346 9.01e-10 7cza:B
9 5xkd:A 445 156 0.1468 0.1079 0.3077 1.33e-08 5xkd:B, 5xkd:C, 5xkd:D
10 8qpl:A 331 176 0.1376 0.1360 0.2557 3.98e-08 8qpl:B
11 1rhc:A 330 216 0.1529 0.1515 0.2315 0.003
12 3b4y:A 332 143 0.1254 0.1235 0.2867 0.010 3b4y:B
13 1ezw:A 347 290 0.1988 0.1873 0.2241 0.021
14 5gky:A 3660 73 0.0612 0.0055 0.2740 0.28 5gky:C, 5gky:E, 5gky:G, 5gkz:A, 5gkz:C, 5gkz:E, 5gkz:G, 5gl0:A, 5gl0:C, 5gl0:E, 5gl0:G, 5gl1:A, 5gl1:C, 5gl1:E, 5gl1:G
15 8k49:T 627 124 0.0948 0.0494 0.2500 0.32 8k42:R, 8k42:S, 8k42:T, 8k42:U, 8k42:V, 8k42:W, 8k49:R, 8k49:S, 8w9p:R, 8w9p:S, 8w9p:T, 8w9p:U, 8w9p:V, 8w9p:W, 8w9q:R, 8w9q:S, 8w9q:T
16 3dzd:A 368 49 0.0428 0.0380 0.2857 1.5 3dzd:B
17 7bip:B 329 255 0.1957 0.1945 0.2510 3.3
18 8v4a:A 466 44 0.0398 0.0279 0.2955 3.5 9bnj:A, 9bnj:B, 9bnj:C, 9bnj:D, 8v2k:A, 8v2k:B, 8v2k:C, 8v2k:D, 8v4a:B, 8v4a:C, 8v4a:D, 8v6p:A, 8v6p:B, 8v6p:C, 8v6p:D, 8v9p:A, 8v9p:B, 8v9p:C, 8v9p:D, 5w19:A, 5w19:B, 5w19:C, 5w19:D
19 7q03:A 328 84 0.0703 0.0701 0.2738 4.3 7q07:A
20 3fcp:A 356 107 0.0917 0.0843 0.2804 5.2 3fcp:B, 3fcp:C, 3fcp:D, 3fcp:E, 3fcp:F, 3fcp:G, 3fcp:H
21 8s65:B 411 70 0.0795 0.0633 0.3714 5.8 8s65:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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