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BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
SMDVFWFLPTHGDGHYLGTTQGARPVTLNYLKQVAQAADSLGYHGVLIPTGRSCEDSWVIASALVPLTERLRYLVAIRPG
IISPTVSARMAATLDRLSNGRLLINVVTGGDPDENRGDGSFLSHSERYEVTDEFLKIWRRVLQGEAVDFEGKHLKVQNAK
ALYPPVQKPYPPLYFGGSSDAAHDLAAEQVDVYLTWGEPPAAVAEKLADVRERAARHGRKVKFGIRLHVIVRETAEEAWK
AADKLIEHISDETIEAAQKSFSRFDSEGQRRMAALHDGRRDNLEIAPNLWAGVGLVRGGSGTALVGDPQQVAARIKEYAD
LGIESFIFSGYPHLEEAYRFAELVFPLLPEPYASLA

The query sequence (length=356) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 7jw9:A 378 356 1.0000 0.9418 1.0000 0.0 7jw9:B, 7jw9:C, 7jw9:D, 7jyb:A, 7jyb:C, 7jyb:E, 7k14:A, 7k14:B, 7k14:C, 7k14:D, 7k14:E, 7k14:G, 7k64:A, 7k64:C, 7k64:E
2 7k64:H 348 356 0.9157 0.9368 0.9157 0.0 7jyb:B, 7jyb:D, 7jyb:G, 7k14:H, 7k64:D, 7k64:G
3 3b9o:A 433 341 0.2416 0.1986 0.2522 1.71e-16 3b9o:B
4 5wan:A 341 192 0.1489 0.1554 0.2760 3.79e-13 6sgg:AAA, 6sgl:AAA, 6sgm:AAA, 6sgn:AAA, 6tee:AAA, 6tef:AAA, 6teg:AAA
5 5w4y:A 450 384 0.2472 0.1956 0.2292 1.09e-12 5w4y:B, 5w4z:A, 5w4z:B
6 1yw1:A 393 388 0.2809 0.2545 0.2577 1.01e-10
7 6asl:A 430 300 0.2191 0.1814 0.2600 1.22e-10
8 7cza:A 419 238 0.1713 0.1456 0.2563 1.93e-09 7cza:B
9 5xkd:A 445 156 0.1348 0.1079 0.3077 1.76e-08 5xkd:B, 5xkd:C, 5xkd:D
10 8qpl:A 331 176 0.1264 0.1360 0.2557 4.02e-08 8qpl:B
11 1rhc:A 330 167 0.1152 0.1242 0.2455 0.003
12 3b4y:A 332 143 0.1152 0.1235 0.2867 0.009 3b4y:B
13 1ezw:A 347 166 0.1067 0.1095 0.2289 0.044
14 5gky:A 3660 73 0.0562 0.0055 0.2740 0.29 5gky:C, 5gky:E, 5gky:G, 5gkz:A, 5gkz:C, 5gkz:E, 5gkz:G, 5gl0:A, 5gl0:C, 5gl0:E, 5gl0:G, 5gl1:A, 5gl1:C, 5gl1:E, 5gl1:G
15 3aw5:A 438 103 0.0646 0.0525 0.2233 0.43 6k3d:A, 8p4g:A, 8p4g:B
16 6fxh:A 481 178 0.1236 0.0915 0.2472 0.72 5cqz:A, 5cqz:B, 5cr7:A, 5cr7:B, 6ddb:A, 6ddb:B, 6ddc:A, 6ddc:B, 6ddh:A, 6ddz:A, 6de2:A, 6de3:A, 6fir:A, 6fis:A, 6fiu:A, 6fiw:A, 4h4b:A, 2j2c:A, 2jc9:A, 2jcm:A, 5opk:A, 5opl:A, 5opm:A, 5opo:A, 2xcv:A, 2xcw:A, 2xjb:A, 2xjc:A, 2xjd:A, 2xje:A, 2xjf:A
17 2qed:A 252 95 0.0590 0.0833 0.2211 1.5
18 3dzd:A 368 49 0.0393 0.0380 0.2857 1.5 3dzd:B
19 8k49:T 627 42 0.0337 0.0191 0.2857 3.3 8k42:R, 8k42:S, 8k42:T, 8k42:U, 8k42:V, 8k42:W, 8k49:R, 8k49:S, 8w9p:R, 8w9p:S, 8w9p:T, 8w9p:U, 8w9p:V, 8w9p:W, 8w9q:R, 8w9q:S, 8w9q:T
20 7bip:B 329 146 0.1096 0.1185 0.2671 3.9
21 8v4a:A 466 44 0.0365 0.0279 0.2955 4.1 9bnj:A, 9bnj:B, 9bnj:C, 9bnj:D, 8v2k:A, 8v2k:B, 8v2k:C, 8v2k:D, 8v4a:B, 8v4a:C, 8v4a:D, 8v6p:A, 8v6p:B, 8v6p:C, 8v6p:D, 8v9p:A, 8v9p:B, 8v9p:C, 8v9p:D, 5w19:A, 5w19:B, 5w19:C, 5w19:D
22 8s65:B 411 72 0.0730 0.0633 0.3611 4.5 8s65:A
23 7q03:A 328 64 0.0534 0.0579 0.2969 4.6 7q07:A
24 3fcp:A 356 107 0.0843 0.0843 0.2804 6.9 3fcp:B, 3fcp:C, 3fcp:D, 3fcp:E, 3fcp:F, 3fcp:G, 3fcp:H
25 7zve:E 500 99 0.0702 0.0500 0.2525 9.7 2bh9:A, 2bhl:A, 2bhl:B, 6e07:L, 6e07:C, 6e07:F, 6e07:N, 6e07:Q, 6e07:T, 6e07:W, 6e07:B, 6e08:L, 6jyu:A, 1qki:A, 1qki:B, 1qki:C, 1qki:D, 1qki:E, 1qki:F, 1qki:G, 1qki:H, 7snh:A, 7snh:B, 7snh:C, 7snh:D, 7sni:A, 7sni:B, 7sni:C, 7sni:D, 7ual:A, 7ual:B, 7ual:C, 7ual:D, 7uc2:A, 7uc2:B, 7uc2:C, 7uc2:D, 5ukw:A, 7zvd:N

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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