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TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
SMDVFWFLPTHGDGHYLGTTQGARPVTLNYLKQVAQAADSLGYHGVLIPTGRSCEDSWVIASALVPLTERLRYLVAIRPG
IISPTVSARMAATLDRLSNGRLLINVVTGGDPDENRGDGSFLSHSERYEVTDEFLKIWRRVLQGEAVDFEGKHLKVQNAK
ALYPPVQKPYPPLYFGGSSDAAHDLAAEQVDVYLTWGEPPAAVAEKLADVRERAARHGRKVKFGIRLHVIVRETAEEAWK
AADKLIEHISDETIEAAQKSFSRFDSEGQRRMAALHDGDNLEIAPNLWAGVGLVRGGSGTALVGDPQQVAARIKEYADLG
IESFIFSGYPHLEEAYRFAELVFPLLPEPYASLA

The query sequence (length=354) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 7jw9:A 378 356 1.0000 0.9365 0.9944 0.0 7jw9:B, 7jw9:C, 7jw9:D, 7jyb:A, 7jyb:C, 7jyb:E, 7k14:A, 7k14:B, 7k14:C, 7k14:D, 7k14:E, 7k14:G, 7k64:A, 7k64:C, 7k64:E
2 7k64:H 348 354 0.9209 0.9368 0.9209 0.0 7jyb:B, 7jyb:D, 7jyb:G, 7k14:H, 7k64:D, 7k64:G
3 3b9o:A 433 339 0.2401 0.1963 0.2507 9.08e-17 3b9o:B
4 5wan:A 341 192 0.1497 0.1554 0.2760 3.83e-13 6sgg:AAA, 6sgl:AAA, 6sgm:AAA, 6sgn:AAA, 6tee:AAA, 6tef:AAA, 6teg:AAA
5 5w4y:A 450 380 0.2514 0.1978 0.2342 1.37e-12 5w4y:B, 5w4z:A, 5w4z:B
6 1yw1:A 393 386 0.2825 0.2545 0.2591 5.20e-11
7 6asl:A 430 300 0.2203 0.1814 0.2600 1.31e-10
8 7cza:A 419 238 0.1723 0.1456 0.2563 2.10e-09 7cza:B
9 5xkd:A 445 156 0.1356 0.1079 0.3077 1.79e-08 5xkd:B, 5xkd:C, 5xkd:D
10 8qpl:A 331 279 0.1836 0.1964 0.2330 2.33e-08 8qpl:B
11 1rhc:A 330 216 0.1412 0.1515 0.2315 0.003
12 1ezw:A 347 300 0.1921 0.1960 0.2267 0.003
13 3b4y:A 332 263 0.1780 0.1898 0.2395 0.005 3b4y:B
14 6fxh:A 481 177 0.1299 0.0956 0.2599 0.20 5cqz:A, 5cqz:B, 5cr7:A, 5cr7:B, 6ddb:A, 6ddb:B, 6ddc:A, 6ddc:B, 6ddh:A, 6ddz:A, 6de2:A, 6de3:A, 6fir:A, 6fis:A, 6fiu:A, 6fiw:A, 4h4b:A, 2j2c:A, 2jc9:A, 2jcm:A, 5opk:A, 5opl:A, 5opm:A, 5opo:A, 2xcv:A, 2xcw:A, 2xjb:A, 2xjc:A, 2xjd:A, 2xje:A, 2xjf:A
15 5gky:A 3660 73 0.0565 0.0055 0.2740 0.32 5gky:C, 5gky:E, 5gky:G, 5gkz:A, 5gkz:C, 5gkz:E, 5gkz:G, 5gl0:A, 5gl0:C, 5gl0:E, 5gl0:G, 5gl1:A, 5gl1:C, 5gl1:E, 5gl1:G
16 3aw5:A 438 103 0.0650 0.0525 0.2233 0.46 6k3d:A, 8p4g:A, 8p4g:B
17 3dzd:A 368 49 0.0395 0.0380 0.2857 1.4 3dzd:B
18 7q03:A 328 61 0.0537 0.0579 0.3115 1.8 7q07:A
19 8k49:T 627 47 0.0367 0.0207 0.2766 2.1 8k42:R, 8k42:S, 8k42:T, 8k42:U, 8k42:V, 8k42:W, 8k49:R, 8k49:S, 8w9p:R, 8w9p:S, 8w9p:T, 8w9p:U, 8w9p:V, 8w9p:W, 8w9q:R, 8w9q:S, 8w9q:T
20 7bip:B 329 146 0.1102 0.1185 0.2671 4.2
21 8v4a:A 466 44 0.0367 0.0279 0.2955 4.2 9bnj:A, 9bnj:B, 9bnj:C, 9bnj:D, 8v2k:A, 8v2k:B, 8v2k:C, 8v2k:D, 8v4a:B, 8v4a:C, 8v4a:D, 8v6p:A, 8v6p:B, 8v6p:C, 8v6p:D, 8v9p:A, 8v9p:B, 8v9p:C, 8v9p:D, 5w19:A, 5w19:B, 5w19:C, 5w19:D
22 3fcp:A 356 107 0.0847 0.0843 0.2804 6.6 3fcp:B, 3fcp:C, 3fcp:D, 3fcp:E, 3fcp:F, 3fcp:G, 3fcp:H
23 8s65:B 411 70 0.0734 0.0633 0.3714 7.4 8s65:A
24 4y1p:B 336 123 0.0819 0.0863 0.2358 8.3 4y1p:A
25 7zve:E 500 99 0.0706 0.0500 0.2525 9.5 2bh9:A, 2bhl:A, 2bhl:B, 6e07:L, 6e07:C, 6e07:F, 6e07:N, 6e07:Q, 6e07:T, 6e07:W, 6e07:B, 6e08:L, 6jyu:A, 1qki:A, 1qki:B, 1qki:C, 1qki:D, 1qki:E, 1qki:F, 1qki:G, 1qki:H, 7snh:A, 7snh:B, 7snh:C, 7snh:D, 7sni:A, 7sni:B, 7sni:C, 7sni:D, 7ual:A, 7ual:B, 7ual:C, 7ual:D, 7uc2:A, 7uc2:B, 7uc2:C, 7uc2:D, 5ukw:A, 7zvd:N

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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