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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
SMDVFWFLPTHGDGHYLGTTQGARPVTLNYLKQVAQAADSLGYHGVLIPTGRSCEDSWVIASALVPLTERLRYLVAIRPG
IISPTVSARMAATLDRLSNGRLLINVVTGGDPDENRGDGSFLSHSERYEVTDEFLKIWRRVLQGEAVDFEGKHLKVQNAK
ALYPPVQKPYPPLYFGGSSDAAHDLAAEQVDVYLTWGEPPAAVAEKLADVRERAARHGRKVKFGIRLHVIVRETAEEAWK
AADKLIEHISAALHDGRRDNLEIAPNLWAGVGLVRGGSGTALVGDPQQVAARIKEYADLGIESFIFSGYPHLEEAYRFAE
LVFPLLPEPYASLANLTGPFGEMANDV

The query sequence (length=347) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 7jw9:A 378 375 1.0000 0.9180 0.9253 0.0 7jw9:B, 7jw9:C, 7jw9:D, 7jyb:A, 7jyb:C, 7jyb:E, 7k14:A, 7k14:B, 7k14:C, 7k14:D, 7k14:E, 7k14:G, 7k64:A, 7k64:C, 7k64:E
2 7k64:H 348 353 0.9769 0.9741 0.9603 0.0 7jyb:B, 7jyb:D, 7jyb:G, 7k14:H, 7k64:D, 7k64:G
3 3b9o:A 433 337 0.2392 0.1917 0.2463 1.86e-16 3b9o:B
4 5wan:A 341 281 0.2133 0.2170 0.2633 5.68e-14 6sgg:AAA, 6sgl:AAA, 6sgm:AAA, 6sgn:AAA, 6tee:AAA, 6tef:AAA, 6teg:AAA
5 1yw1:A 393 372 0.2680 0.2366 0.2500 7.02e-11
6 6asl:A 430 285 0.2104 0.1698 0.2561 3.23e-10
7 5w4y:A 450 266 0.1700 0.1311 0.2218 1.33e-09 5w4y:B, 5w4z:A, 5w4z:B
8 7cza:A 419 238 0.1758 0.1456 0.2563 2.05e-09 7cza:B
9 8qpl:A 331 272 0.1787 0.1873 0.2279 1.02e-08 8qpl:B
10 5xkd:A 445 156 0.1383 0.1079 0.3077 1.55e-08 5xkd:B, 5xkd:C, 5xkd:D
11 1rhc:A 330 216 0.1441 0.1515 0.2315 0.002
12 3b4y:A 332 143 0.1182 0.1235 0.2867 0.010 3b4y:B
13 1ezw:A 347 287 0.1758 0.1758 0.2125 0.025
14 5gky:A 3660 73 0.0576 0.0055 0.2740 0.30 5gky:C, 5gky:E, 5gky:G, 5gkz:A, 5gkz:C, 5gkz:E, 5gkz:G, 5gl0:A, 5gl0:C, 5gl0:E, 5gl0:G, 5gl1:A, 5gl1:C, 5gl1:E, 5gl1:G
15 8k49:T 627 126 0.0893 0.0494 0.2460 0.52 8k42:R, 8k42:S, 8k42:T, 8k42:U, 8k42:V, 8k42:W, 8k49:R, 8k49:S, 8w9p:R, 8w9p:S, 8w9p:T, 8w9p:U, 8w9p:V, 8w9p:W, 8w9q:R, 8w9q:S, 8w9q:T
16 7bip:B 329 263 0.1844 0.1945 0.2433 1.1
17 7q03:A 328 119 0.0778 0.0823 0.2269 1.3 7q07:A
18 3dzd:A 368 49 0.0403 0.0380 0.2857 1.5 3dzd:B
19 8s65:B 411 72 0.0749 0.0633 0.3611 3.4 8s65:A
20 8v4a:A 466 44 0.0375 0.0279 0.2955 3.9 9bnj:A, 9bnj:B, 9bnj:C, 9bnj:D, 8v2k:A, 8v2k:B, 8v2k:C, 8v2k:D, 8v4a:B, 8v4a:C, 8v4a:D, 8v6p:A, 8v6p:B, 8v6p:C, 8v6p:D, 8v9p:A, 8v9p:B, 8v9p:C, 8v9p:D, 5w19:A, 5w19:B, 5w19:C, 5w19:D
21 3fcp:A 356 107 0.0865 0.0843 0.2804 5.8 3fcp:B, 3fcp:C, 3fcp:D, 3fcp:E, 3fcp:F, 3fcp:G, 3fcp:H
22 3x27:D 314 45 0.0461 0.0510 0.3556 7.4 3x27:A, 3x27:B, 3x27:C
23 8duj:G 3933 74 0.0605 0.0053 0.2838 7.7

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218