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BioLiP
>protein
SMDRRKAATMRERRRLKKVNQAFETLKRCTTTNPNQRLPKVEILRNAIRYIESLQE

The query sequence (length=56) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 7z5i:A 56 56 1.0000 1.0000 1.0000 2.21e-35 7z5i:B, 7z5k:A, 7z5k:B
2 1mdy:A 68 53 0.8393 0.6912 0.8868 3.61e-29 1mdy:B, 1mdy:C, 1mdy:D
3 8osb:B 66 51 0.3571 0.3030 0.3922 2.30e-07
4 2ypa:A 67 52 0.4107 0.3433 0.4423 2.20e-05 2ypb:A
5 2ql2:B 59 55 0.3750 0.3559 0.3818 1.36e-04 2ql2:D
6 6od3:A 62 55 0.3571 0.3226 0.3636 0.007 6od3:B, 6od3:H, 6od3:E, 6od3:F, 6od4:A, 6od4:B, 6od5:A, 6od5:B, 6od5:C, 6od5:D, 8osb:A
7 1gth:A 1019 56 0.2857 0.0157 0.2857 0.058 8f5w:A, 8f5w:B, 8f5w:C, 8f5w:D, 8f61:A, 8f61:B, 8f61:C, 8f61:D, 8f6n:A, 8f6n:B, 8f6n:C, 8f6n:D, 1gt8:A, 1gt8:B, 1gt8:C, 1gt8:D, 1gte:A, 1gte:B, 1gte:C, 1gte:D, 1gth:B, 1gth:C, 1gth:D, 1h7w:A, 1h7w:B, 1h7w:C, 1h7w:D, 1h7x:A, 1h7x:B, 1h7x:C, 1h7x:D, 7ljs:A, 7ljs:B, 7ljs:C, 7ljs:D, 7ljt:A, 7ljt:B, 7ljt:C, 7ljt:D, 7lju:A, 7lju:C, 7lju:D, 7lju:B, 7m31:A, 7m31:B, 7m31:C, 7m31:D, 7m32:A, 7m32:B, 7m32:C, 7m32:D
8 2ypb:B 74 56 0.3214 0.2432 0.3214 0.12 2ql2:A, 2ql2:C, 2ypa:B
9 5gnj:B 77 45 0.3036 0.2208 0.3778 0.47 5gnj:G, 5gnj:I, 5gnj:A, 5gnj:E, 5gnj:F, 5gnj:M, 5gnj:N
10 1hlo:A 80 52 0.2143 0.1500 0.2308 0.58
11 5eyo:C 88 52 0.2143 0.1364 0.2308 0.71 1an2:A, 5eyo:A, 1hlo:B, 1nkp:B, 1nkp:E, 1nlw:B, 1nlw:E
12 5i50:B 96 53 0.3036 0.1771 0.3208 0.91 5i50:A, 1nkp:A, 1nkp:D
13 8ix9:C 314 17 0.1429 0.0255 0.4706 2.1 8ix9:B, 8ix9:A, 8ixh:A, 8ixh:B, 8ixh:C, 8ixm:A, 8ixm:B
14 6s0k:h 838 53 0.2857 0.0191 0.3019 2.2 5k9t:A, 2vda:A
15 4tr2:B 474 27 0.2679 0.0316 0.5556 2.4 8coy:A, 8coy:B, 8coz:A, 8coz:B, 8cp0:A, 8qke:A, 8qke:B, 8qkg:A, 8qkg:B, 8qkj:A, 8qkj:B, 4tr2:A
16 6sl2:A 619 30 0.2321 0.0210 0.4333 2.5 5nl7:A, 6sl3:A
17 8r9b:A 301 36 0.2321 0.0432 0.3611 5.1 7b5o:J, 7b5q:J, 8orm:J, 8p4z:A, 8p4z:B, 8p6v:J, 8p6w:J, 8p6x:J, 8p6y:J, 8p6z:J, 8p70:J, 8p71:J, 8p72:J, 8p73:J, 8p74:J, 8p75:J, 8p76:J, 8p77:J, 8p78:J, 8p7l:J, 8plz:J, 8r99:A, 8r9a:A, 8r9b:B, 8r9b:C, 8r9b:D, 8r9o:A, 8r9o:B, 8r9s:A, 8r9s:B, 8r9u:A, 8r9u:B, 1ua2:A, 1ua2:B, 1ua2:C, 1ua2:D, 6xbz:J, 6xd3:J

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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