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BioLiP
>protein
SMDIDPYKEFGATVELLSFLPSDFFPSVRDLLDTAAALYRDALESPEHCSPHHTALRQAILCWGDLMTLATWVGTNLEDP
ASRDLVVSYVNTNVGLKFRQLLWFHISCLTFGRETVLEYLVSFGVWIRTPPAARPPNA

The query sequence (length=138) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 8i71:B 155 137 0.9928 0.8839 1.0000 8.67e-101 6bvf:B, 6bvf:C, 6bvn:C, 6bvn:B, 9c9v:A, 9c9v:B, 9c9v:C, 9c9v:D, 9c9v:E, 9c9v:F, 5d7y:B, 5d7y:C, 5e0i:A, 5e0i:B, 5e0i:C, 5e0i:D, 5e0i:E, 4g93:B, 4g93:C, 8gbu:A, 8gbu:F, 8gbu:B, 8gbu:C, 8gbu:D, 8gbu:E, 8gih:A, 8gih:B, 8gih:C, 8gih:E, 8gih:F, 5gmz:A, 5gmz:B, 5gmz:C, 5gmz:D, 5gmz:E, 5gmz:F, 6hu4:B, 6hu4:A, 6hu4:C, 6hu4:D, 6hu7:A, 6hu7:C, 6hu7:D, 8i71:A, 8i71:C, 8i71:D, 8i71:E, 8i71:F, 6j10:B, 6j10:D, 6j10:F, 7k5m:A, 7k5m:B, 7k5m:C, 7k5m:D, 7k5m:F, 8khu:C, 8khu:D, 8khu:A, 8khu:B, 8khu:E, 8khu:F, 7od6:B, 7od6:A, 7od6:C, 7od6:D, 7od7:C, 7od7:D, 7od8:C, 7od8:D, 7od8:B, 7od8:A, 7oen:C, 7oen:D, 7oen:B, 7oen:A, 7oev:C, 7oev:D, 7oev:B, 7oev:A, 7oew:C, 7oew:D, 7oew:B, 7oew:A, 8pwo:A, 8pwo:C, 8pwo:D, 8px3:B, 8px3:A, 8px3:C, 8px3:D, 8px6:A, 8px6:C, 8px6:D, 7pzi:B, 7pzi:A, 7pzi:C, 7pzi:D, 7pzk:B, 7pzk:A, 7pzk:C, 7pzk:D, 7pzl:A, 7pzl:B, 7pzl:C, 7pzl:D, 7pzm:B, 7pzm:A, 7pzm:C, 7pzm:D, 7pzn:C, 7pzn:D, 7pzn:B, 7pzn:A, 7s76:A, 7s76:B, 7s76:C, 7s76:D, 7s76:E, 5t2p:A, 5t2p:B, 5t2p:C, 5t2p:D, 5t2p:E, 5t2p:F, 8w9g:A, 8w9g:F, 8w9g:B, 8w9g:C, 8w9g:D, 8w9g:E, 6wfs:A, 6wfs:B, 6wfs:C, 6wfs:D, 5wre:A, 5wre:B, 5wre:C, 5wre:D, 5wre:E, 5wre:F
2 5e0i:F 137 138 0.8768 0.8832 0.8768 3.90e-84 8gih:D, 7k5m:E, 7s76:F
3 6ygi:C 156 155 0.2826 0.2500 0.2516 5.26e-05 6ygi:A, 6ygi:B, 6ygi:D
4 6ygh:D 193 49 0.1159 0.0829 0.3265 6.84e-04 6ygh:A, 6ygh:B, 6ygh:C
5 6ygh:D 193 43 0.1159 0.0829 0.3721 7.5 6ygh:A, 6ygh:B, 6ygh:C
6 8b6g:CA 599 32 0.1087 0.0250 0.4688 2.1 8bqs:CA, 8gym:sa, 8gym:SA, 8gzu:sa, 8gzu:SA
7 7c4k:A 614 43 0.0870 0.0195 0.2791 6.1 7c4l:A, 7c4m:A, 7c4n:A
8 5b6e:A 319 66 0.1449 0.0627 0.3030 7.2 5b6d:A, 5b6d:B, 5b6e:B, 5jp9:A, 5jp9:B
9 8fkw:SU 562 35 0.0870 0.0214 0.3429 8.5 8fkv:SU, 8fkx:SU, 8fky:SU

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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