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BioLiP
>protein
SLYRVLILNDDYTPAEFVVYVLERFFNKSREDATRIMLHVHQNGVGVCGVYTYEVAETKVAQVIDSARRHQHPLQCTMEK
D

The query sequence (length=81) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 3gq1:A 85 81 0.9877 0.9412 0.9877 6.53e-57 3dnj:A, 3dnj:B, 3g19:A, 3g1b:A, 3g1b:B, 3g3p:B, 3gq1:B, 3gw1:A, 3gw1:B
2 3o2b:C 105 80 0.5679 0.4381 0.5750 5.75e-30 1mbx:D, 3o2b:A, 3o2h:A, 1r6o:D, 1r6q:D, 2w9r:A, 2wa8:A, 2wa8:C, 2wa9:A, 2wa9:B, 2wa9:C, 2wa9:D, 2wa9:E, 2wa9:F, 2wa9:G
3 4yjx:C 84 81 0.3951 0.3810 0.3951 5.21e-16 4yjx:A, 4yjx:B, 4yjx:D, 4yka:A, 4yka:B, 4yka:C, 4yka:D
4 7d34:A 79 62 0.2593 0.2658 0.3387 0.002
5 4gnk:B 769 33 0.1605 0.0169 0.3939 1.2 8emv:A, 8emw:A, 8emx:A, 4gnk:D, 4qj3:B, 4qj4:B, 4qj5:B, 7sq2:B, 8uqn:B, 8uqo:Q
6 4en4:A 310 80 0.2469 0.0645 0.2500 1.4 2ajp:A, 2ajp:B, 4en4:B, 4eoh:A, 4eoh:B, 3fhx:A, 3fhx:B, 3fhy:A, 3fhy:B, 3keu:A, 3keu:B, 8wr2:A, 8wr2:B, 2yxt:A, 2yxt:B, 2yxu:A, 2yxu:B
7 5h1w:A 270 50 0.2099 0.0630 0.3400 2.9 5b7y:A, 5b7y:B, 5b80:A, 5b80:B, 5h1w:B, 5h6h:A, 5h6h:B
8 7m1q:A 1911 25 0.1111 0.0047 0.3600 3.8
9 8f5b:A 1924 25 0.1111 0.0047 0.3600 3.8 7lkz:A
10 7e7q:A 1958 25 0.1111 0.0046 0.3600 3.8
11 7e7o:A 2003 25 0.1111 0.0045 0.3600 3.8 7lkp:A
12 4nzf:D 435 15 0.1235 0.0230 0.6667 5.3 4nzf:A, 4nzf:B, 4nzf:C, 4nzf:E, 4nzf:F, 4nzf:G, 4nzf:H
13 4qsh:C 1081 37 0.1235 0.0093 0.2703 7.0 4qsh:A, 4qsh:D, 4qsh:B, 4qsk:A, 4qsk:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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