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BioLiP
>protein
SLYRLIFSSQGIPNLQPQDLKDILESSQRNNPANGITGLLCYSKPAFLQVLEGECEQVNETYHRIVQDERHHSPQIIECM
PIRRRNFEVWSMQAITVNDLSTEQVKTLVLKYSGFTTLRPSAMDPEQCLNFLLDIAKIYE

The query sequence (length=140) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 2hfo:A 150 140 0.9929 0.9267 0.9929 1.57e-103 2hfn:A, 2hfn:B, 2hfn:C, 2hfn:D, 2hfn:E, 2hfn:F, 2hfn:G, 2hfn:H, 2hfn:I, 2hfn:J, 2hfo:B, 2hfo:C, 2hfo:D, 2hfo:E, 2hfo:F, 2hfo:G, 2hfo:H, 2hfo:I, 2hfo:J, 3mzi:A, 3mzi:B, 3mzi:C, 3mzi:D, 3mzi:E, 3mzi:F
2 8i98:F 143 135 0.4214 0.4126 0.4370 4.92e-38 8i98:A, 8i98:B, 8i98:C, 8i98:D, 8i98:E, 8i98:G, 8i98:H, 8i98:I, 8i98:J, 8i98:K, 8i98:L, 8i98:M, 8i98:N, 8i98:O, 8i98:P, 8i98:Q, 8i98:R, 8i98:S, 8i98:T, 1x0p:A, 1x0p:B, 1x0p:C, 1x0p:D, 1x0p:E, 1x0p:F, 1x0p:G, 1x0p:H, 1x0p:I, 1x0p:J
3 6w6z:A 151 133 0.3214 0.2980 0.3383 2.95e-15 6w72:A, 6w72:B
4 4hh0:A 383 87 0.2500 0.0914 0.4023 2.87e-14 4hh0:B, 4hh1:A, 4hh1:B, 2iyg:A, 2iyg:B, 2iyi:A, 2iyi:B, 1yrx:A, 1yrx:B, 1yrx:C
5 2bun:A 121 87 0.2429 0.2810 0.3908 3.46e-14
6 5m2a:A 346 100 0.2500 0.1012 0.3500 8.98e-13 5m27:A, 5m27:B, 5m2a:B, 5mbb:A, 5mbb:B, 5mbc:A, 5mbc:B, 5mbd:A, 5mbd:B, 5mbe:A, 5mbe:B, 5mbh:A, 5mbj:A, 5mbk:A, 5nby:A
7 4yut:A 351 75 0.2143 0.0855 0.4000 5.99e-11 8qfe:A, 8qff:A, 8qfg:A, 8qfh:A, 8qfi:A, 8qfj:A, 5x4t:A, 5x4u:A, 5x4v:A, 4yus:A, 4yut:B
8 2byc:A 137 82 0.1929 0.1971 0.3293 2.64e-09 2byc:B
9 3gfx:B 394 121 0.2571 0.0914 0.2975 6.62e-09 3gfx:A, 3gfz:A, 3gfz:B, 3gg0:A, 3gg0:B, 3gg1:A, 3gg1:B, 2kb2:A
10 3gfy:B 374 121 0.2571 0.0963 0.2975 7.69e-09 3gfy:A
11 8ouw:3 619 64 0.1500 0.0339 0.3281 0.047
12 6yw5:II 247 18 0.0714 0.0405 0.5556 0.60 6ywe:II, 6ywx:II, 6ywy:II
13 7o5l:A 417 19 0.0857 0.0288 0.6316 6.3 7o5l:C, 7o5m:A, 7o5m:C, 7zd7:A, 7zd7:C, 7zd8:A, 7zd8:C, 7zd9:A, 7zd9:C
14 7kzp:L 370 19 0.0714 0.0270 0.5263 7.5 4ccg:X, 4ccg:Y, 7kzq:L, 7kzq:M, 7kzr:L, 7kzr:M, 7kzs:L, 7kzs:M, 7kzt:L, 7kzt:M, 7kzv:L, 7kzv:M, 3zqs:A
15 3l22:A 429 24 0.0857 0.0280 0.5000 9.2

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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