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BioLiP
>protein
SLYPPPPPYVKFFTQSNLEKLPKYKEKKAASAKEEEITCALDYLIPPPMPKNQQYRAFGSIWQENESNYQYKIQELRKLL
KSLLLNYLELIGVLSINPDMYERKVENIRTILVNIHHLLNEYRPHQSRESLIMLLEEQLEYKRGEIREIEQVCKQVHDKL
TSIQDTLRTGS

The query sequence (length=171) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 7uio:Ag 171 171 1.0000 1.0000 1.0000 1.55e-124 5sva:U, 7ui9:g, 7uif:g, 7uig:g, 7uio:Bg
2 4rji:C 555 84 0.1287 0.0396 0.2619 3.0 4rji:A, 4rji:B, 4rji:D, 4rjj:A, 4rjj:B, 4rjj:C, 4rjj:D, 4rjj:E, 4rjj:F, 4rjj:G, 4rjj:H, 4rjk:A, 4rjk:B, 4rjk:C, 4rjk:D, 4rjk:E, 4rjk:F, 4rjk:G, 4rjk:H
3 7m2k:A 169 108 0.1696 0.1716 0.2685 3.6 7m2k:C, 7m2k:E, 7m2k:G, 4mdk:A, 4mdk:B, 4mdk:C, 4mdk:D, 3rz3:A, 3rz3:B, 3rz3:C, 3rz3:D
4 1gp6:A 349 57 0.0936 0.0458 0.2807 5.0 2brt:A, 1gp4:A, 1gp5:A
5 5d4v:B 260 35 0.0643 0.0423 0.3143 7.0 5d4u:A, 5d4u:B, 5d4u:C, 5d4u:D, 5d4v:A, 5d4v:C, 5d4v:D
6 5hms:A 330 52 0.0994 0.0515 0.3269 7.2 1e51:A, 5hms:B, 5hnr:A
7 4y4v:A 316 68 0.1170 0.0633 0.2941 8.1 4y4v:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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