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TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
SLYERLGGEQKIARIAADIFDTHATNPTVASRFKDSDRERVIKMVTEFLSAGTGGPQDYTGKSMPEAHRSMNINEAEYLA
VIDDIMVALDKNEVGDQEKQELLMIAYSLKGEIIGA

The query sequence (length=116) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 8tls:A 116 116 0.9828 0.9828 0.9828 1.22e-81 8tls:B, 7tt9:A, 7tt9:B, 7tt9:C, 7tt9:D, 8ugz:A, 8ugz:B, 8ugz:C, 8ugz:D, 8uzu:A, 8uzu:B, 8uzu:C, 8uzu:D, 8vij:A, 8vij:B, 8vij:C, 8vij:D, 8vsh:A, 8vsh:B, 8vsh:C, 8vsh:D, 8w3a:A, 8w3a:B, 8w3a:C, 8w3a:D
2 1dlw:A 116 114 0.2672 0.2672 0.2719 1.49e-15 1uvy:A
3 3aq5:A 117 96 0.2672 0.2650 0.3229 8.09e-14 3aq5:B, 3aq6:A, 3aq6:B, 3aq7:A, 3aq7:B, 3aq8:A, 3aq8:B, 3aq9:A, 3aq9:B
4 1s56:B 135 109 0.2328 0.2000 0.2477 4.98e-08 5ab8:A, 2gkm:A, 2gkm:B, 2gkn:A, 2gkn:B, 2gl3:A, 2gl3:B, 2gln:A, 2gln:B, 1idr:A, 1idr:B, 1rte:A, 1rte:B, 1s56:A, 1s61:A, 1s61:B
5 1dly:A 121 116 0.2155 0.2066 0.2155 4.38e-06 1uvx:A
6 4xdi:A 127 119 0.2414 0.2205 0.2353 4.07e-05 6cii:A, 4xdi:B
7 2hz1:A 123 93 0.2069 0.1951 0.2581 7.24e-05 2hz2:A, 2hz3:A, 1mwb:A, 1rtx:A, 1s69:A, 1s6a:A
8 4uzv:A 129 62 0.1552 0.1395 0.2903 2.89e-04 2bmm:A
9 2bkm:A 128 119 0.2845 0.2578 0.2773 8.54e-04 2bkm:B
10 2ksc:A 123 114 0.2069 0.1951 0.2105 0.001 4l2m:A, 4l2m:B, 4max:A, 4max:B, 4max:C
11 4uur:A 124 62 0.1724 0.1613 0.3226 0.033 4uur:B
12 6bme:A 127 85 0.1724 0.1575 0.2353 0.047 6bme:B
13 5v3u:A 131 97 0.2500 0.2214 0.2990 0.10 5v3t:A, 5v3t:B, 5v3u:B, 5v3v:A, 5v3v:B
14 5d1v:A 121 112 0.2759 0.2645 0.2857 0.22 5d1v:B
15 5y6p:a4 162 72 0.1897 0.1358 0.3056 0.22 5y6p:b4, 5y6p:d4, 5y6p:f4, 5y6p:i4, 5y6p:k4, 5y6p:a5, 5y6p:b5, 5y6p:i5, 5y6p:d5, 5y6p:f5, 5y6p:k5, 5y6p:V8, 5y6p:i9, 5y6p:X8, 5y6p:Z8, 5y6p:k9, 5y6p:g9, 5y6p:aa, 5y6p:ai, 5y6p:ac, 5y6p:ae, 5y6p:ag, 5y6p:ak, 5y6p:ba, 5y6p:bc, 5y6p:be, 5y6p:bg, 5y6p:bi, 5y6p:bk, 5y6p:ca, 5y6p:cc, 5y6p:ce, 5y6p:cg, 5y6p:ci, 5y6p:ck
16 1ngk:B 127 120 0.2328 0.2126 0.2250 0.43 1ngk:A, 1ngk:C, 1ngk:D, 1ngk:E, 1ngk:F, 1ngk:G, 1ngk:H, 1ngk:I, 1ngk:J, 1ngk:K, 1ngk:L, 2qrw:A, 2qrw:B, 2qrw:C, 2qrw:D, 2qrw:E, 2qrw:F, 2qrw:G, 2qrw:H, 2qrw:I, 2qrw:J, 2qrw:K, 2qrw:L
17 2vjh:A 164 55 0.1466 0.1037 0.3091 2.1 2vjh:C
18 3zrq:A 382 29 0.1121 0.0340 0.4483 3.4 3zrp:A, 3zrp:B, 3zrq:B, 3zrr:A, 3zrr:B
19 7mgv:A 333 53 0.1810 0.0631 0.3962 3.6 7mgv:B
20 3lku:E 291 52 0.1466 0.0584 0.3269 3.7 3lku:A
21 5bwe:A 857 30 0.0776 0.0105 0.3000 4.3 5bwd:A, 5bwe:D
22 8ovh:A 400 50 0.1207 0.0350 0.2800 5.2 8ovh:B, 8ovh:C, 8ovh:D
23 1pa2:A 306 49 0.1293 0.0490 0.3061 5.4 1qo4:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218