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BioLiP
>protein
SLWNWFNITNWLWYIKLFIMIVGGLVGLRIVFAV

The query sequence (length=34) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 6sne:J 34 34 1.0000 1.0000 1.0000 2.11e-17
2 6v4t:C 51 34 0.8235 0.5490 0.8235 7.26e-15 6v4t:A, 6v4t:B
3 3gwo:A 53 16 0.4706 0.3019 1.0000 8.48e-06 5zcx:Q, 5zcx:W
4 7z8s:E 1514 22 0.3529 0.0079 0.5455 3.8 7zb5:E, 7zb5:H
5 4jyy:A 202 8 0.1765 0.0297 0.7500 4.1 4jz2:A, 4jzg:A, 3tjt:A
6 7b0k:A 255 27 0.3824 0.0510 0.4815 4.2
7 5esr:A 308 19 0.3235 0.0357 0.5789 6.0
8 4zjl:A 1044 21 0.2647 0.0086 0.4286 6.6 3aob:C, 3aoc:C, 3aod:A, 3aod:C, 9bfh:A, 9bfm:A, 9bfn:A, 9bft:A, 2dr6:A, 2drd:A, 4dx5:B, 4dx7:A, 4dx7:B, 8ffs:A, 5jmn:A, 5jmn:B, 5jmn:C, 5nc5:B, 5ng5:K, 5ng5:L, 5ng5:J, 7ouk:A, 7ouk:B, 7ouk:C, 7oul:A, 7oul:C, 7oum:A, 7oum:B, 7oum:C, 8p1i:A, 8p1i:B, 6q4n:A, 6q4n:B, 6q4n:C, 6q4o:B, 2rdd:A, 1t9u:A, 1t9v:A, 1t9w:A, 1t9x:A, 1t9y:A, 4u8v:B, 4u8y:B, 4u95:B, 2w1b:A, 3w9h:B, 4zjl:D, 4zjo:A, 4zjo:D, 4zjq:A, 4zjq:D, 6zo5:B, 6zo5:C, 6zo6:B, 6zo6:C, 6zo7:A, 6zo7:B, 6zo8:B, 6zo8:C, 6zo9:B, 6zob:A, 6zoc:A, 6zoc:B, 6zod:A, 6zod:B, 6zof:B, 6zog:B, 6zoh:A, 6zoh:B, 6zoh:C
9 7z7n:E 1306 19 0.2941 0.0077 0.5263 8.4
10 7xoi:B 436 14 0.2059 0.0161 0.5000 8.4 7xoi:D, 7xoi:F, 7xoi:H, 7xoi:J, 7xoi:L, 7xoi:N, 7xoi:P
11 6hiv:AY 340 19 0.2059 0.0206 0.3684 8.5 7aoi:AY, 6hix:AY, 6yxx:AY, 6yxy:AY

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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