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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
SLVTSVKDYVEITHKLIEIEPLKNYTEFGAVFTYFIFSIGEFFKNFFSFSFLNNIWSIPIIIPDIASAMISEVSVLDGYF
HNAFTFLETPSLVIFEKFVIGIINSLFLILPTSTSHLITLRRFVMQGLEAGYMAGLGTLAGNFLWLASIILGWRFFVIPW
LSLDIFRYLLGFVLLVKYIWDSSKERRMALEDLSKWKIFLLNFLLALTEQSCIYPFISNLSFGPDASILEGFPVDNYPQF
LLIHGAYLLGILFGSFSLLQFTCWFWENPAFSIYLWITTKSSLKISTSSYYKILNFTFLYATMLCAIASIPYYGLDYTIT
NPIGLVPQDRILNQKKSQSDPDKLITETAFLNLNPTDKNSRIRDGVHARRERWKQRLIKYQAFDASTYDQGVYDFLTIED
LNYGFDRFWLRRKMRNHQGPRVEFFRILFEQFYHPNFHDRGLVLTNTQATLLPTDLQTKRTIKPGLIYTNSALRKFVRNV
NTRLNLKLLNSKQFIYSKRWKSIFSKIQPLQNGTTRKSYQLFRNVAKQILVTPDAKSLKLITINQKLSLKERKLLELRTQ
YNNNTLVRPLNVYLQKEEAFKRKLRYYGTMPMRKLTVGNQAPYFKALMKRGFYYYKPTLRWRKTLYVASLRRGFRKKSRK
QRILVMSLITKPTHSYTVLGKRASRYRHQIYKDVLQHWYYTPFNRLLMKFDVDAFINRQPKSHFLTKNEERALHIRRFLL
SEHYDTLRWYTYMQHYKTMKTNIGGTKSFANRAYNQQFQGTFKKIRHLFAITPKQGDFYTLKFDQPLYNDNKLKDNLYFH
EELLTDYYNGTNLQTNQTSNISVNSTTNFVYSELFVKLIKECKKRIHDQTFLKNYITHRIEKREQLNQEQTKELNKRLEK
LKVWLNSDKPDKVLTTAMQKAVNESISLSGIMPSDKIKTTYGNLTNAYTIKTENAILTKLNVINQLTLRVKTDKDLQWWR
TKQRVITKRKSARKRDRFKKQIAVVNKKLRKKISSKGRRYRSLSLARYLTATRKPRLVGLDNLTKIDNITTLQGAFITKE
EKQDSLNLTIQRKQELTNSLKKSQIKKRSRHSWKKRSRHQFSRNHYKYRKRHTHGNGKLRVMNKKLKKFKATNELRQWWW
NSFLPRYLSNLQKSFDITSMTTTLPFYAGWDESLKKFVVTNRLLSRRDAGLSVNNNPQEINFTNPPIQGLNEGSFLYWQT
EMPFNSYNIDQFITTNQSFYAPLGWRRFEFRHSILKTWVNNKTLIISLKNLQPLKSSQQKQNQIKTKKLVARRIKKRYKL
LKQMPNQLMYSPTGPLLTEVLPSHYISVFDQQYRLPRNRYLKRNPLKTLKKTTLLALMDSSKQTNGVNKEFTLRKRVKPR
RKYHRKRFIKKDGLIFPRRTKFNTNDDLRWRPSSQLRRREFQQVLKPLQRYIPQNGGFTWPGDYLRLEIVEMPKLKSINI
KKTSLKQKINVQPVGIMPRKYLIEKHNIKVLKKKLSQAYSTQQLTKVVQEYKNLIQ

The query sequence (length=1496) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 7vcf:A 1496 1496 1.0000 1.0000 1.0000 0.0
2 7xzi:A 1598 1617 0.9840 0.9212 0.9103 0.0
3 7xzj:A 423 248 0.1297 0.4586 0.7823 1.91e-113
4 7xzj:A 423 165 0.0628 0.2222 0.5697 2.32e-36
5 7xzj:A 423 48 0.0301 0.1064 0.9375 1.13e-20
6 7xzj:A 423 70 0.0361 0.1277 0.7714 1.31e-20
7 7xzj:A 423 52 0.0307 0.1087 0.8846 2.14e-17
8 8hpt:A 255 130 0.0201 0.1176 0.2308 0.20
9 8i01:A 594 126 0.0187 0.0471 0.2222 4.6 8beo:A, 8beo:B, 8beo:C, 8beo:E, 8beo:D, 8beo:F, 8i01:B, 8i01:C, 8i01:E, 8i01:D, 8i01:F, 8i05:A, 8i05:B, 8i05:C, 8i05:E, 8i05:D, 8i05:F, 8i07:A, 8i07:B, 8i07:C, 8i07:E, 8i07:D, 8i07:F, 8i08:A, 8i08:B, 8i08:C, 8i08:E, 8i08:D, 8i08:F, 2pan:A, 2pan:B, 2pan:C, 2pan:D, 2pan:E, 2pan:F
10 7an1:AAA 483 34 0.0094 0.0290 0.4118 6.8 7oqd:AAA

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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