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BioLiP
>protein
SLVGQHILSVQQFTKDQMSHLFNVAHTLRMMVQKERSLDILKGKVMASMFYEVSTRTSSSFAAAMARLGGAVLSFSEATS
SVQKGESLADSVQTMSCYADVVVLRHPQPGAVELAAKHCRRPVINAGDGVGEHPTQALLDIFTIREELGTVNGMTITMVG
DLKHGRTVHSLACLLTQYRVSLRYVAPPSLRMPPTVRAFVASRGTKQEEFESIEEALPDTDVLYMTRIQKERFGSTQEYE
ACFGQFILTPHIMTRAKKKMVVMHPMPRVNEISVEVDSDPRAAYFRQAENGMYIRMALLATVLGRF

The query sequence (length=306) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 5g1n:E 307 306 1.0000 0.9967 1.0000 0.0 5g1n:A, 5g1n:B, 5g1n:C, 5g1n:D, 5g1n:F, 5g1p:A, 5g1p:B, 5g1p:C, 5g1p:D, 5g1p:E, 5g1p:F
2 8bpl:A 316 304 0.5294 0.5127 0.5329 4.53e-110
3 1ml4:A 307 302 0.4739 0.4723 0.4801 3.80e-100
4 6yvb:C 324 301 0.4542 0.4290 0.4618 9.17e-96 6ypo:A, 6ypo:B, 6ys6:B, 6ys6:C, 6ysp:A, 6ysp:B, 6ysp:C, 6yvb:A, 6yvb:B, 6yvb:D, 6yvb:E, 6yvb:F, 6yw9:A, 6yw9:B, 6yw9:C, 6ywj:A, 6ywj:B
5 6jks:D 328 318 0.4706 0.4390 0.4528 1.02e-91 6jkr:A, 6jkr:D, 6jkr:F, 6jks:A, 6jks:F, 6jkt:A, 6jkt:B, 6jkt:C, 6jkt:D, 6jkt:E, 6jl4:A, 6jl4:B, 6jl4:C, 6jl4:D, 6jl4:E, 6jl4:F, 6jl5:A, 6jl5:B, 6jl5:C, 6jl5:D, 6jl5:E, 6jl5:F, 6jl6:C
6 2a0f:A 310 308 0.4477 0.4419 0.4448 1.01e-87 1acm:A, 1acm:C, 2air:A, 2air:G, 1at1:A, 1at1:C, 2at1:A, 2at1:C, 3at1:A, 3at1:C, 7at1:A, 7at1:C, 8at1:A, 8at1:C, 8atc:A, 8atc:C, 1d09:A, 1d09:C, 1ekx:A, 1ekx:B, 1ekx:C, 4f04:A, 4f04:C, 1f1b:A, 1f1b:C, 4fyv:A, 2fzc:A, 2fzc:C, 2fzg:A, 2fzg:C, 2fzk:A, 2fzk:C, 2h3e:A, 2h3e:C, 2hse:A, 2hse:C, 2ipo:A, 2ipo:C, 4kgv:A, 4kgv:C, 4kgx:A, 4kgx:C, 4kgz:A, 4kgz:C, 4kh0:A, 4kh0:C, 4kh1:A, 4kh1:C, 3mpu:A, 3mpu:C, 3mpu:E, 3npm:A, 1q95:A, 1q95:B, 1q95:C, 1q95:D, 1q95:F, 1q95:E, 1r0b:A, 1r0b:B, 1r0b:C, 1r0b:D, 1r0b:E, 1r0b:F, 1r0c:A, 1r0c:G, 1tth:A, 1tth:C, 1tu0:A, 1tu0:C, 1tug:A, 1tug:C, 5vmq:C, 1xjw:A, 1xjw:C, 1za2:A, 1za2:C
7 4ekn:B 304 301 0.4248 0.4276 0.4319 2.41e-86
8 6jkr:E 308 311 0.4444 0.4416 0.4373 3.26e-86 6jkr:B, 6jkr:C, 6jks:B, 6jks:C, 6jks:E, 6jkt:F
9 7zea:B 346 316 0.3856 0.3410 0.3734 1.18e-79 6fba:A, 6fba:B, 6fba:C, 6hl7:A, 7zcz:A, 7zcz:C, 7zcz:B, 7zea:A, 7zgs:A, 7zgs:C, 7zgs:B, 7zhi:A, 7zhi:C, 7zhi:B, 7zid:B, 7zp2:A, 7zp2:B, 7zst:B, 7zst:C
10 6hl7:C 322 315 0.3497 0.3323 0.3397 3.81e-67
11 3r7d:A 291 304 0.3399 0.3574 0.3421 3.07e-53 3r7d:C, 3r7d:B, 3r7f:A, 3r7f:B, 3r7f:C, 3r7l:A, 3r7l:B, 3r7l:C, 3r7l:D, 3r7l:E, 3r7l:F
12 6pnz:A 293 311 0.3464 0.3618 0.3408 6.55e-48 6pnz:B, 6pnz:C
13 4nf2:A 307 304 0.2712 0.2704 0.2730 4.57e-29 4nf2:B, 4nf2:C
14 4bjh:B 291 268 0.2810 0.2955 0.3209 1.60e-27 3d6n:B
15 1c9y:A 321 314 0.2647 0.2523 0.2580 2.91e-23 1ep9:A, 1fb5:A, 1fvo:A, 1fvo:B, 1oth:A
16 7nnv:A 308 309 0.2582 0.2565 0.2557 7.62e-19 2i6u:A, 2i6u:B, 2i6u:C, 7nnv:B, 7nnv:C, 7nnv:D, 7nnv:E, 7nnv:F, 7nnw:A, 7nnw:B, 7nnw:C, 7nnw:D, 7nnw:E, 7nnw:F, 7nny:C, 7nny:A, 7nny:B, 7nny:D, 7nny:F, 7nny:E, 7nnz:C, 7nnz:B, 7nnz:D, 7nnz:F, 7nnz:E, 7nor:A, 7nor:C, 7nor:B, 7nor:D, 7nor:F, 7nor:E, 7nos:A, 7nos:C, 7nos:D, 7nos:F, 7nos:E, 7nou:A, 7nou:B, 7nou:C, 7nou:D, 7nou:F, 7nou:E, 7nov:A, 7nov:C, 7nov:B, 7nov:D, 7nov:E, 7nov:F, 7np0:B, 7np0:C, 7np0:A, 7np0:D, 7np0:F, 7np0:E
17 8qeu:A 304 309 0.2778 0.2796 0.2751 2.60e-17 8qeu:B, 8qeu:C, 8qev:A, 8qev:B, 8qev:C
18 1duv:G 333 332 0.2778 0.2553 0.2560 1.73e-14 1duv:H, 1duv:I, 2otc:A, 2otc:B, 2otc:C, 2otc:D, 2otc:E, 2otc:F, 2otc:G, 2otc:H, 2otc:I
19 4am8:D 349 312 0.2353 0.2063 0.2308 2.55e-13 4a8h:A, 4a8h:B, 4a8p:A, 4a8p:B, 4a8p:C, 4a8p:D, 4a8p:E, 4a8p:F, 4a8t:A, 4am8:A, 4am8:B, 4am8:C, 4am8:E, 4am8:F
20 4jfr:B 340 335 0.2353 0.2118 0.2149 1.06e-07 4h31:A, 4h31:B, 4h31:C, 4jfr:A, 4jhx:A, 4jhx:C, 4jqo:A, 4jqo:B, 4jqo:C
21 3kzk:A 334 342 0.2451 0.2246 0.2193 5.21e-05 3kzm:A, 3kzn:A, 3kzo:A, 3l02:A, 3l04:A, 3l05:A, 3l06:A, 3m4j:A, 3m4n:A, 3m5c:A, 3m5d:A
22 1js1:X 324 145 0.1013 0.0957 0.2138 0.010 2fg6:X, 2fg6:Z, 2fg6:Y, 2fg6:C, 2fg6:D, 2fg6:E, 2fg7:X, 2fg7:Z, 2fg7:Y, 2fg7:C, 2fg7:D, 2fg7:E, 2g7m:X, 2g7m:Z, 2g7m:Y, 2g7m:C, 2g7m:E, 2g7m:D, 1js1:Y
23 2dki:A 615 47 0.0523 0.0260 0.3404 1.6 2dkh:A
24 7qun:A 694 100 0.0784 0.0346 0.2400 5.9 7qun:B, 7qun:C, 7qun:D
25 2vfa:B 205 58 0.0523 0.0780 0.2759 6.8 2vfa:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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