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TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
SLTDEELVTMSVRELNQHLRGLSKEEIVQLKQRRRTLKNRGYAASCRVKRVTQKEELEKQKAELQQEVEKLASENASMKL
ELDALRSKYEALQTFARTV

The query sequence (length=99) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 7x5e:E 101 99 1.0000 0.9802 1.0000 4.58e-66 3a5t:A, 3a5t:B, 7x5e:A, 7x5f:A, 7x5f:E, 7x5g:A, 7x5g:E
2 2wty:B 97 96 0.5354 0.5464 0.5521 7.87e-32 4auw:A, 4auw:B, 4auw:E, 4auw:F, 2wt7:B, 2wty:A
3 4eot:A 92 91 0.5253 0.5652 0.5714 1.24e-30 4eot:B
4 7x5e:B 106 72 0.1919 0.1792 0.2639 1.1 7x5e:F, 7x5f:B, 7x5f:F, 7x5g:B, 7x5g:F
5 5ysw:A 374 39 0.1515 0.0401 0.3846 2.1 5ysm:A
6 2e5w:A 280 55 0.1717 0.0607 0.3091 2.3 2e5w:C, 2zsu:A, 2zsu:C, 2zsu:E
7 7vuk:B 472 17 0.1010 0.0212 0.5882 2.8
8 9eq5:A 511 42 0.1616 0.0313 0.3810 5.2 9eq5:D, 9eq5:B, 9eq5:C
9 2atj:A 308 39 0.1515 0.0487 0.3846 6.7 1atj:A, 1atj:B, 1atj:C, 1atj:D, 1atj:E, 1atj:F, 2atj:B, 3atj:A, 3atj:B, 4atj:A, 4atj:B, 6atj:A, 7atj:A, 1gw2:A, 1gwo:A, 1gwt:A, 1gwu:A, 1gx2:A, 1gx2:B, 1h55:A, 1h57:A, 1h58:A, 1h5a:A, 1h5c:A, 1h5d:A, 1h5e:A, 1h5f:A, 1h5g:A, 1h5h:A, 1h5i:A, 1h5j:A, 1h5k:A, 1h5l:A, 1h5m:A, 1hch:A, 1kzm:A, 1w4w:A, 1w4y:A, 2ylj:A
10 8i0k:A 875 46 0.1515 0.0171 0.3261 7.7 8i0k:B, 7wgr:A, 7wgr:B
11 7nyw:B 858 41 0.1414 0.0163 0.3415 9.7

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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