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BioLiP
>protein
SLTDAKIRTLKPSDKPFKVSDSHGLYLLVKPGGSRHWYLKYRISGKESRIALGAYPAISLSDARQQREGIRKMLALN

The query sequence (length=77) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 3rmp:A 77 77 1.0000 1.0000 1.0000 4.64e-52 3rmp:C
2 6g84:B 368 46 0.2468 0.0516 0.4130 0.056 6g84:A, 6g85:A, 6g85:B, 6g86:A, 6g86:B, 5xw5:A
3 6jj7:A 465 40 0.1299 0.0215 0.2500 0.25 6jj7:C, 6jj7:E, 6jj8:C, 6jj8:A, 6jj8:B, 6jj9:C, 6jj9:A, 6jj9:E, 5zqt:A, 5zqt:B, 5zqt:C
4 2uvp:C 186 19 0.1299 0.0538 0.5263 1.3 2uvp:B
5 6ksv:A 427 32 0.1558 0.0281 0.3750 1.8 6ksv:B
6 1fr6:A 361 19 0.1169 0.0249 0.4737 8.2 1fr6:B, 8jb8:A, 8jb8:B, 1rgy:A
7 6h6v:F 446 59 0.1948 0.0336 0.2542 8.6 6h6v:A, 6h6v:B, 6h6v:C, 6h6v:D, 6h6v:E, 6h6x:B, 6h6x:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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