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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
SLSSKLSVQDLDLKDKRVFIRVDFNVPLDGKKITSNQRIVAALPTIKYVLEHHPRYVVLASHLGQPNGERNEKYSLAPVA
KELQSLLGKDVTFLNDCVGPEVEAAVKASAPGSVILLENLRYHIEEEGSRKVDGQKVKASKEDVQKFRHELSSLADVYIN
DAFGTAHRAHSSMVGFDLPQRAAGFLLEKELKYFGKALENPTRPFLAILGGAKVADKIQLIDNLLDKVDSIIIGGGMAFT
FKKVLENTEIGDSIFDKAGAEIVPKLMEKAKAKGVEVVLPVDFIIADAFSADANTKTVTDKEGIPAGWQGLDNGPESRKL
FAATVAKAKTIVWNGPPGVFEFEKFAAGTKALLDEVVKSSAAGNTVIIGGGDTATVAKKYGVTDKISHVSTGGGASLELL
EGKELPGVAFLSEKK

The query sequence (length=415) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 3pgk:A 415 415 0.9735 0.9735 0.9735 0.0 1qpg:A
2 4o33:A 417 414 0.6506 0.6475 0.6522 0.0 4axx:A, 3c3a:B, 3c3b:A, 3c3b:B, 3c3c:A, 1hdi:A, 1kf0:A, 5m1r:A, 5m3u:A, 5m6z:A, 5mxm:A, 5np8:A, 4o3f:A, 5o7d:A, 1vjc:A, 1vjd:A, 2wzb:A, 2wzc:A, 2wzd:A, 2x13:A, 2x14:A, 2x15:A, 2xe7:A, 2xe8:A, 2y3i:A, 2y3i:D, 2ybe:A, 2zgv:A, 3zoz:A
3 2paa:A 413 411 0.6217 0.6247 0.6277 0.0
4 1ltk:C 424 416 0.6120 0.5991 0.6106 5.38e-180 1ltk:A, 1ltk:B
5 6yje:A 416 417 0.5880 0.5865 0.5851 1.32e-173 6yjf:A
6 1vpe:A 398 412 0.4988 0.5201 0.5024 2.60e-131
7 1php:A 394 413 0.5012 0.5279 0.5036 4.03e-128
8 3zlb:A 398 415 0.4819 0.5025 0.4819 3.19e-115
9 13pk:A 415 429 0.4554 0.4554 0.4406 1.21e-109 13pk:B, 13pk:C, 13pk:D, 16pk:A
10 4fey:A 392 417 0.4361 0.4617 0.4341 2.76e-101
11 4ng4:B 389 413 0.4217 0.4499 0.4237 1.06e-98 4ng4:A, 4ng4:C
12 1zmr:A 386 417 0.3976 0.4275 0.3957 2.87e-81
13 2iz1:B 471 106 0.0699 0.0616 0.2736 0.080 2iyo:A, 2iyp:A, 2iyp:B, 2iyp:C, 2iz0:A, 2iz0:B, 2iz0:C, 2iz1:A, 2iz1:C
14 3fwn:A 467 100 0.0675 0.0600 0.2800 0.17 3fwn:B, 2zya:A, 2zya:B, 2zyd:A, 2zyd:B
15 6uak:A 297 111 0.0723 0.1010 0.2703 0.35
16 6mxc:C 220 112 0.0723 0.1364 0.2679 0.80 6aqo:A, 6aqo:B, 6aqo:C, 6aqo:D, 6aqo:E, 6aqo:F, 6ar9:A, 6ar9:B, 6ar9:C, 6ar9:D, 6ar9:E, 6ar9:F, 6mxb:A, 6mxb:B, 6mxb:C, 6mxb:D, 6mxb:E, 6mxb:F, 6mxc:A, 6mxc:B, 6mxc:D, 6mxc:E, 6mxc:F, 6mxd:A, 6mxd:B, 6mxd:C, 6mxd:D, 7scr:A, 7scr:C, 7scr:B, 7scr:D, 7scr:E, 7scr:F
17 2e7y:A 272 88 0.0651 0.0993 0.3068 0.97 2e7y:B
18 6m5r:B 689 45 0.0410 0.0247 0.3778 1.1 6m5s:B, 6m5u:B, 6m5v:B
19 6tg3:D 327 91 0.0699 0.0887 0.3187 3.2 5l9g:A, 5l9g:B, 5l9i:A, 5l9i:B, 5l9l:A, 5l9l:B, 6tg2:A, 6tg2:B, 6tg2:C, 6tg2:D, 6tg3:A, 6tg3:B, 6tg3:C
20 6smp:B 417 26 0.0313 0.0312 0.5000 3.4 6smo:B, 6smo:D, 6smo:F, 6smp:E, 6smp:H, 6smp:K
21 8rbx:k 552 101 0.0819 0.0616 0.3366 4.1 7pks:k, 8rbz:k
22 4q95:A 141 66 0.0434 0.1277 0.2727 4.5 4q95:B
23 3seq:D 650 67 0.0434 0.0277 0.2687 4.6 3dla:B, 3seq:C, 3sez:D, 3sez:C, 3syt:D, 3szg:B
24 6ofc:B 669 67 0.0434 0.0269 0.2687 5.2 3dla:A, 3dla:D, 3dla:C, 6ofc:A, 6ofc:D, 6ofc:C, 3seq:A, 3seq:B, 3sez:A, 3sez:B, 3syt:A, 3syt:B, 3syt:C, 3szg:A, 3szg:D, 3szg:C
25 2w90:B 471 96 0.0651 0.0573 0.2812 5.5 2w8z:A, 2w8z:B, 2w90:A
26 5o25:B 323 94 0.0699 0.0898 0.3085 7.1 5o1u:A, 5o1u:B, 5o25:A, 5o4z:A, 5o58:A, 5o70:A, 5o7f:A, 5o7f:B
27 8tbx:A 458 50 0.0361 0.0328 0.3000 7.3

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218