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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
SLSPAVQTFWKWLQEEGVITAKTPVKASVVTEGLGLVALKDISRNDVILQVPKRLWINPDAVAASEIGRVCSELKPWLSV
ILFLIRERSREDSVWKHYFGILPQETDSTIYWSEEELQELQGSQLLKTTVSVKEYVKNECLKLEQEIILPNKRLFPDPVT
LDDFFWAFGILRSRAFSRLRNENLVVVPMADLINHSAGVTTEDHAYEVKGAAGLFSWDYLFSLKSPLSVKAGEQVYIQYD
LNKSNAELALDYGFIEPNENRHAYTLTLEISESDPFFDDKLDVAESNGFAQTAYFDIFYNRTLPPGLLPYLRLVALGGTD
AFLLESLFRDTIWGHLELSVSRDNEELLCKAVREACKSALAGYHTTIEQDRELKEGNLDSRLAIAVGIREGEKMVLQQID
GIFEQKELELDQLEYYQERRLKDLGLCGENGDILENLYFQ

The query sequence (length=440) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 1ozv:B 441 440 1.0000 0.9977 1.0000 0.0 2h21:A, 2h21:B, 2h21:C, 2h23:A, 2h23:B, 2h23:C, 2h2e:A, 2h2e:B, 2h2e:C, 2h2j:A, 2h2j:B, 2h2j:C, 1mlv:A, 1mlv:B, 1mlv:C, 1ozv:A, 1ozv:C, 1p0y:A, 1p0y:B, 1p0y:C
2 6ox1:B 484 411 0.2591 0.2355 0.2774 1.63e-33 6ict:A, 6ict:B, 6ict:C, 6ict:D, 6icv:A, 6icv:B, 6jat:A, 6jat:C, 7lms:A, 6mbj:A, 6mbj:B, 6mbk:A, 6mbk:B, 6mbl:A, 6ox0:A, 6ox0:B, 6ox1:A, 6ox2:A, 6ox2:B, 6ox3:A, 6ox3:B, 6ox4:A, 6ox4:B, 6ox5:A, 3smt:A, 6v62:A, 6v63:A, 6v63:B, 7w28:A, 7w29:A, 6wk1:A, 6wk1:B, 6wk2:A, 6wk2:D, 8x77:B
3 8qma:J 426 425 0.2545 0.2629 0.2635 2.29e-16 8r5o:L, 8r6s:L, 8ras:L, 8rdj:L
4 3qxy:A 420 271 0.1432 0.1500 0.2325 5.40e-06 3qxy:B, 3rc0:A, 3rc0:B
5 5ksw:B 262 104 0.0591 0.0992 0.2500 0.76 5ksw:D, 5ue9:B, 5ue9:D
6 1ep1:B 261 101 0.0523 0.0881 0.2277 2.2 1ep2:B, 1ep3:B
7 1p5j:A 319 64 0.0500 0.0690 0.3438 2.7
8 5kok:A 348 96 0.0545 0.0690 0.2500 3.1 5koc:A, 5koc:B, 5kok:B, 5kpc:A, 5kpc:B, 5kpg:A, 5kpg:B
9 7oik:A 4426 117 0.0750 0.0075 0.2821 4.0 7oim:A, 6tax:A, 6tay:A
10 2jki:B 223 34 0.0364 0.0717 0.4706 7.5 2jki:A, 2jki:C, 4x9l:A, 2xcm:A, 2xcm:B
11 5npl:A 181 56 0.0409 0.0994 0.3214 8.5

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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