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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
SLSNSSKVSVLISLLEKSRDLDYIINQLEHSLQCAYFAQRSGADNEMVLAALLHDLGHYCNTSFEDMGGYGVWQHEKVGA
DYLRGLGFSERVACLIEGHVAAKRYLVSSKASYLKNLSDASRKTLEYQGGPMDEGERRLFEEREDFKDCLKIRAWDEKGK
QTDLKVPGPEHYRKMMEEHLSE

The query sequence (length=182) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 4mlm:A 188 186 1.0000 0.9681 0.9785 8.06e-132 4mlm:B, 4mln:A, 4mln:B, 4n6w:A, 4n71:A, 4n71:B, 4n71:D, 4n71:E
2 6npa:A 188 187 0.3297 0.3191 0.3209 1.10e-28 6npa:B, 6npa:C, 6npa:D
3 8jpx:B 770 45 0.0989 0.0234 0.4000 0.16 8jpx:A
4 1z26:A 716 45 0.0989 0.0251 0.4000 0.16 1z25:A
5 6laa:A 753 102 0.1538 0.0372 0.2745 1.1 6gii:A, 6ldl:A
6 8tjj:C 330 57 0.1099 0.0606 0.3509 1.4 8tjj:A, 8tjj:B, 8tjj:D, 8tjk:A, 8tjk:B
7 5eks:A 355 91 0.1484 0.0761 0.2967 2.3 5eks:B
8 3iht:A 163 82 0.1154 0.1288 0.2561 3.9
9 6lla:B 363 44 0.1044 0.0523 0.4318 4.6 6lk2:A, 6lk2:B, 6lk2:C, 6lk2:D, 6lla:A, 6lla:C, 6lla:D
10 4lv4:A 320 49 0.0879 0.0500 0.3265 5.0
11 4del:A 345 49 0.0879 0.0464 0.3265 5.1 4a22:A, 4a22:B, 4def:A, 3ekl:A, 3ekz:A, 3elf:A
12 2v0n:A 459 42 0.0769 0.0305 0.3333 6.2 2v0n:B, 1w25:A, 1w25:B, 2wb4:A, 2wb4:B
13 2hek:A 369 39 0.0879 0.0434 0.4103 7.2 2hek:B
14 5syt:A 444 21 0.0604 0.0248 0.5238 7.5 4aw6:A, 4aw6:B, 4aw6:D, 4aw6:E, 6bh8:B
15 3wfr:H 463 58 0.0989 0.0389 0.3103 7.5 3wfq:E, 3wfq:F, 3wfq:G, 3wfq:H, 3wfr:E, 3wfr:F, 3wfr:G, 3wfs:C, 3wfs:D
16 6srg:A 455 62 0.1154 0.0462 0.3387 9.4

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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