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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
SLSNKLTLDKLDVKGKRVVMRVDFNVPMKNNQITNNQRIKAAVPSIKFCLDNGAKSVVLMSHLGRPDGVPMPDKYSLEPV
AVELKSLLGKDVLFLKDCVGPEVEKACANPAAGSVILLENLRFHVEEEGKGKDASGNKVKAEPAKIEAFRASLSKLGDVY
VNDAFDTAHRAHSSMVGVNLPQKAGGFLMKKELNYFAKALESPERPFLAILGGAKVADKIQLINNMLDKVNEMIIGGGMA
FTFLKVLNNMEIGTSLFDEEGAKIVKDLMSKAEKNGVKITLPVDFVTADKFDENAKTGQATVASGIPAGWMGLDCGPESS
KKYAEAVTRAKQIVWNGPVGVFEWEAFARGTKALMDEVVKATSRGCITIIGGGDTATCCAKWNTEDKVSHVSTGGGASLE
LLEGKVLPGVDALSNI

The query sequence (length=416) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 4o33:A 417 416 0.9952 0.9928 0.9952 0.0 4axx:A, 3c3a:B, 3c3b:A, 3c3b:B, 3c3c:A, 1hdi:A, 1kf0:A, 5m1r:A, 5m3u:A, 5m6z:A, 5mxm:A, 5np8:A, 4o3f:A, 5o7d:A, 1vjc:A, 1vjd:A, 2wzb:A, 2wzc:A, 2wzd:A, 2x13:A, 2x14:A, 2x15:A, 2xe7:A, 2xe8:A, 2y3i:A, 2y3i:D, 2ybe:A, 2zgv:A, 3zoz:A
2 2paa:A 413 412 0.8462 0.8523 0.8544 0.0
3 3pgk:A 415 414 0.6370 0.6386 0.6401 0.0 1qpg:A
4 1ltk:C 424 415 0.6058 0.5943 0.6072 3.33e-178 1ltk:A, 1ltk:B
5 6yje:A 416 416 0.5889 0.5889 0.5889 1.24e-172 6yjf:A
6 1vpe:A 398 412 0.4808 0.5025 0.4854 3.01e-131
7 1php:A 394 414 0.4663 0.4924 0.4686 6.91e-118
8 13pk:A 415 430 0.4471 0.4482 0.4326 1.50e-111 13pk:B, 13pk:C, 13pk:D, 16pk:A
9 3zlb:A 398 413 0.4567 0.4774 0.4600 8.51e-110
10 4fey:A 392 413 0.4207 0.4464 0.4237 6.23e-101
11 4ng4:B 389 414 0.4111 0.4396 0.4130 4.91e-92 4ng4:A, 4ng4:C
12 1zmr:A 386 411 0.3582 0.3860 0.3625 4.95e-74
13 3fwn:A 467 133 0.0793 0.0707 0.2481 0.047 3fwn:B, 2zya:A, 2zya:B, 2zyd:A, 2zyd:B
14 1nvm:B 312 60 0.0409 0.0545 0.2833 2.1 1nvm:D, 1nvm:H
15 2w90:B 471 148 0.0865 0.0764 0.2432 3.8 2w8z:A, 2w8z:B, 2w90:A
16 2oo4:A 226 67 0.0481 0.0885 0.2985 4.6 2oo4:B
17 6hqv:A 1555 38 0.0337 0.0090 0.3684 4.8 6hqv:B
18 5c0w:K 576 59 0.0505 0.0365 0.3559 5.4 5c0y:B, 5c0y:A, 2hbk:A, 2hbl:A, 2hbm:A, 5k36:J, 4oo1:J, 4wfd:A
19 4ha3:A 489 37 0.0337 0.0286 0.3784 6.5 4ha4:A
20 3zs6:A 506 40 0.0361 0.0296 0.3750 8.6

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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