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BioLiP
>protein
SLSLFVTRLYHAPLSDHGPAIDAEEMESSCYAIAEDDEAGQGWCEENGYPGYTSYASLTDLPWRFPIFADLVKSLDAHVA
AFAEDLEFDLDGRALELEDLWINILPEGGSHASHIHPHSVISGTTYVSMPGGTSALKLEDPRHAMMMAAPARRKTARDEL
RQFIYVTPAVGDVLLWESWLRHEVPMNMSEDDRISVSFNYRWA

The query sequence (length=203) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 3bvc:A 203 203 1.0000 1.0000 1.0000 1.22e-151
2 2rg4:A 206 200 0.8128 0.8010 0.8250 2.40e-123 2rg4:B
3 6rkf:A 335 94 0.1281 0.0776 0.2766 4.6 6rkf:B, 6rkf:C, 6rkf:D, 6rkf:E, 6rkf:F
4 3adi:A 71 28 0.0542 0.1549 0.3929 5.0
5 4xcb:A 260 30 0.0591 0.0462 0.4000 5.2 4xca:A, 4xca:B, 4xca:C, 4xca:D, 4xcb:B, 4xcb:C, 4xcb:D, 4zpi:A, 4zpi:B, 4zpi:C, 4zpi:D
6 4csw:A 388 50 0.0837 0.0438 0.3400 5.8 4csw:B, 4cug:A, 4cug:B
7 5fb9:A 267 174 0.1872 0.1423 0.2184 8.7 5fb9:B, 5fba:A, 5fbb:A, 5fbb:B, 5fbc:A, 5fbd:A, 5fbf:A, 5fbg:A, 5fbg:B, 7qta:A, 7qta:B, 7qtb:A, 7qtb:B
8 2d0v:A 597 40 0.0788 0.0268 0.4000 9.1 2d0v:D, 2d0v:I
9 6a7i:A 409 61 0.0837 0.0416 0.2787 9.8 6a7j:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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