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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
SLRYIVALTGGIGSGKSTVANAFADLGINVIDADIIARQVVEPGAPALHAIADHFGANMIAADGTLQRRALRERIFANPE
EKNWLNALLHPLIQQETQHQIQQATSPYVLWVVPLLVENSLYKKANRVLVVDVSPETQLKRTMQRDDVTREHVEQILAAQ
ATREARLAVADDVIDNNGAPDAIASDVARLHAHYLQLASQFVSQEKPE

The query sequence (length=208) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 1vhl:A 208 208 1.0000 1.0000 1.0000 9.68e-153 6ari:A, 6ari:B, 1vht:A, 1vht:B, 1vht:C
2 8u94:A 201 200 0.6971 0.7214 0.7250 1.15e-100 9bkz:A, 9bkz:B, 8u96:A, 8u97:A
3 4i1v:A 207 198 0.4808 0.4831 0.5051 8.52e-61 4i1v:B
4 1jjv:A 194 201 0.4471 0.4794 0.4627 1.78e-57
5 4ttq:A 201 195 0.3942 0.4080 0.4205 1.67e-50 4ttr:A
6 2f6r:A 230 163 0.2356 0.2130 0.3006 4.74e-19
7 1uf9:B 191 164 0.2308 0.2513 0.2927 8.44e-14 1uf9:C
8 2grj:A 179 144 0.2163 0.2514 0.3125 1.15e-12 2grj:B, 2grj:C, 2grj:D, 2grj:E, 2grj:F, 2grj:G, 2grj:H
9 7yq0:A 173 149 0.1587 0.1908 0.2215 0.43 7yq0:B, 7yq1:A, 7yq1:B, 7yq1:C, 7yq1:D, 7yq1:E, 7yq1:F
10 8a8h:B 146 117 0.1442 0.2055 0.2564 0.45
11 3gp8:A 551 22 0.0673 0.0254 0.6364 0.54 3gpl:A, 3gpl:B
12 2cjw:A 178 54 0.0913 0.1067 0.3519 0.87 2cjw:B, 2g3y:A, 2ht6:A, 2ht6:B
13 5b16:A 722 67 0.1202 0.0346 0.3731 1.8
14 5wqo:A 234 133 0.1827 0.1624 0.2857 2.9 5wqp:A
15 6lxe:A 768 67 0.1202 0.0326 0.3731 2.9
16 9c4g:l 136 33 0.0481 0.0735 0.3030 3.2 8crx:l, 8cvm:l
17 6lxd:A 918 66 0.1106 0.0251 0.3485 3.4 9asm:A, 9asn:A, 9aso:A, 9asp:A, 9asq:A, 6v5b:A, 6v5c:A
18 9gd1:W 849 64 0.0913 0.0224 0.2969 3.9
19 6ftx:W 878 64 0.0913 0.0216 0.2969 3.9 6g0l:W, 5j70:A, 5j70:B, 3mwy:W, 3ted:A
20 7tn2:W 895 64 0.0913 0.0212 0.2969 3.9 9gd2:W, 9gd3:W
21 6g0l:M 855 64 0.0913 0.0222 0.2969 4.0 7nkx:W, 5o9g:W
22 8osf:F 226 75 0.1298 0.1195 0.3600 5.8
23 7c3k:B 389 22 0.0529 0.0283 0.5000 5.8 7c3k:A, 8jqz:A, 8jqz:B
24 3asz:B 208 21 0.0433 0.0433 0.4286 5.8 3asz:A, 3w34:A, 3w34:B, 3w8r:A, 3w8r:B
25 4fkx:A 153 105 0.1490 0.2026 0.2952 6.4 4f4a:A, 4f4a:B, 4f4a:C, 4fkx:B, 4fkx:C, 4fky:A, 4fky:B, 4fky:C
26 5wmm:A 870 115 0.1346 0.0322 0.2435 7.4
27 7d9x:A 336 50 0.0625 0.0387 0.2600 7.4 7d9x:C
28 2uvq:A 211 23 0.0433 0.0427 0.3913 7.7
29 2c40:A 302 58 0.0913 0.0629 0.3276 8.6 2c40:B
30 5np9:A 152 28 0.0577 0.0789 0.4286 8.9 5mvr:A
31 8b0i:D 282 28 0.0481 0.0355 0.3571 9.1 8b0i:A, 8b0i:B, 8b0j:A, 8b0j:B, 8b0j:D, 8b0j:C

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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