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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
SLRVEETEVFKKYFKNLTDRERAVFEGGITLGALFHQFVGTPVSKYNKESLERAIEEAMKNQPCVYDIKVKIRNVGEKYV
SLDGKMLDVDLKIKINKTVAHLKLEYIPEIDYPLMYVKKFEE

The query sequence (length=122) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 2ogf:B 122 122 1.0000 1.0000 1.0000 1.10e-86 2ogf:A, 2ogf:C, 2ogf:D
2 2i52:F 119 112 0.3852 0.3950 0.4196 4.64e-21
3 4fn5:A 670 84 0.2213 0.0403 0.3214 0.17
4 6r84:R 360 58 0.1230 0.0417 0.2586 0.50 6r86:R, 6r87:R
5 2vzs:A 857 58 0.1475 0.0210 0.3103 1.1 2vzs:B, 2vzt:A, 2vzt:B, 2vzu:A, 2vzu:B, 2vzv:A, 2vzv:B, 2x05:A, 2x05:B, 2x09:A, 2x09:B
6 6gtd:A 1269 60 0.1311 0.0126 0.2667 1.2 6i1l:D, 5nfv:A, 5ng6:A, 5ng6:C, 5ng6:E, 5ng6:G
7 7dn3:A 1293 46 0.1311 0.0124 0.3478 1.5 7du2:A
8 6yxs:A 359 52 0.1066 0.0362 0.2500 2.3 3fi8:A, 6yxt:A
9 7d58:A 1387 120 0.2705 0.0238 0.2750 3.4 7a6h:A, 7ae1:A, 7ae3:A, 7aea:A, 7fji:A, 7fjj:A, 8ity:A, 8iue:A, 8iuh:A
10 2fge:A 979 31 0.1066 0.0133 0.4194 4.0 2fge:B
11 6hs0:B 201 14 0.0656 0.0398 0.5714 8.1 6c31:E, 6c31:F, 6c31:G, 6c31:H, 6c31:A, 6c31:B, 6c31:C, 6c31:D, 6hrw:A, 6hrx:A, 6hrx:B, 6hry:A, 6hry:B, 6hrz:A, 6hs0:A, 6hs1:B, 6hs2:B, 5icj:A, 5icj:B, 5n7o:A, 5n7o:B
12 7dv2:A 76 44 0.1148 0.1842 0.3182 9.0 7dv2:B, 7dv2:C, 7dv2:D
13 6fwh:A 196 57 0.1475 0.0918 0.3158 9.9 6fwh:C, 6fwh:F, 6fwh:B, 6fwh:K, 6fwh:G, 6fwh:L, 6fwh:E, 6fwh:D, 6fwh:H, 6fwh:J, 6fwh:I

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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