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●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
SLRDFFRGISANFELGKDFLREMNTPIHVSEAVFLPLSLCTLSPGRCLRLSPFHSLTLGSHCEICINRSQFSSTQLSFFN
NVIIPNKTFYVSLLVKAGLSQPSLLYAYLVTGHFCGTICPIFSTGKGRLIMHLLLQGTSLHIPETCLKLLCENIGPTYEL
AVDLVGDAFCIKVSPRDTVYEDLECGDELRLQIINYTQLILEN

The query sequence (length=203) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 7t7i:D 242 234 1.0000 0.8388 0.8675 9.87e-135 7t7i:B, 7t7i:H, 7t7i:J
2 7t7i:F 208 212 0.9113 0.8894 0.8726 4.35e-119
3 5dob:A 237 171 0.2118 0.1814 0.2515 1.18e-09 5d5n:B, 5doc:A, 5doc:B, 5doe:B
4 4f3w:B 121 51 0.0985 0.1653 0.3922 0.47 4f3w:A, 4f3w:C, 4f3w:D
5 9c20:A 451 61 0.0887 0.0399 0.2951 4.3 8url:A, 8uvv:A
6 6kw6:A 119 51 0.0936 0.1597 0.3725 6.3 6kw6:B
7 3r2n:D 122 48 0.0788 0.1311 0.3333 7.6 3r2n:A, 3r2n:B, 3r2n:C

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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