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TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
SLQVTVRDAINQGMDEELERDEKVFLLGEEVAQYDGAYKVSRGLWKKYGDKRIIDTPISEMGFAGIAVGAAMAGLRPICE
FMTFNFSMQAIDQVINSAAKTYYMSGGLQPVPIVFRGPNGASAGVAAQHSQCFAAWYGHCPGLKVVSPWNSEDAKGLIKS
AIRDNNPVVVLENELMYGVPFEFPPEAQSKDFLIPIGKAKIERQGTHITVVSHSRPVGHCLEAAAVLSKEGVECEVINMR
TIRPMDMETIEASVMKTNHLVTVEGGWPQFGVGAEICARIMEGPAFNFLDAPAVRVTGADVPMPYAKILEDNSIPQVKDI
IFAIKKTLNI

The query sequence (length=330) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 6cer:D 331 330 1.0000 0.9970 1.0000 0.0 6cer:B, 6cer:H, 6cer:F, 6cfo:D, 6cfo:B, 3exe:D, 3exe:B, 3exe:H, 3exe:F, 3exf:D, 3exf:B, 3exf:H, 3exf:F, 3exh:D, 3exh:B, 3exh:H, 3exh:F, 1ni4:D, 1ni4:B, 2ozl:D, 2ozl:B
2 3duf:D 324 327 0.3758 0.3827 0.3792 8.70e-74 3duf:B, 3duf:H, 3duf:F, 3dv0:D, 3dv0:B, 3dv0:H, 3dv0:F, 3dva:D, 3dva:B, 3dva:H, 3dva:F, 1w85:D, 1w85:B, 1w85:H, 1w85:F, 1w88:D, 1w88:B, 1w88:H
3 1umb:D 323 326 0.3879 0.3963 0.3926 1.59e-71 1umb:B, 1umc:D, 1umc:B, 1umd:D, 1umd:B
4 1qs0:B 338 344 0.3576 0.3491 0.3430 3.13e-57
5 2j9f:D 329 330 0.3455 0.3465 0.3455 3.93e-56 1dtw:B, 2j9f:B
6 2o1s:A 536 268 0.1879 0.1157 0.2313 1.24e-10 2o1s:C
7 2o1s:B 493 268 0.1879 0.1258 0.2313 1.40e-10 2o1s:D
8 6yak:DDD 311 337 0.2333 0.2476 0.2285 1.85e-10 6yak:BBB
9 8a9c:B 520 269 0.1970 0.1250 0.2416 2.79e-10
10 8bzx:A 546 269 0.1970 0.1190 0.2416 3.32e-10
11 8bzx:B 568 269 0.1970 0.1144 0.2416 3.42e-10
12 6rjb:B 622 321 0.2182 0.1158 0.2243 1.40e-06 6ha3:A, 6had:A, 4kxu:A, 4kxv:A, 4kxw:A, 4kxx:A, 4kxy:A, 4kxy:B, 3mos:A, 3ooy:A, 3ooy:B, 6rjb:A, 8wa8:A, 8wa9:A, 8wa9:B, 8waa:A, 8waa:B
13 6ouv:A 595 293 0.1909 0.1059 0.2150 1.78e-06 2o1x:A, 2o1x:B, 6ouv:B, 8v9i:A, 8v9i:B
14 6xxg:BBB 539 293 0.1909 0.1169 0.2150 1.86e-06 2o1x:C, 2o1x:D
15 6xxg:AAA 560 293 0.1909 0.1125 0.2150 1.88e-06 6ouw:A
16 8a45:F 573 228 0.1515 0.0873 0.2193 4.33e-05 8a29:A, 8a29:B, 8a29:C, 8a29:D, 8a29:E, 8a29:F, 8a45:A, 8a45:B, 8a45:C, 8a45:D, 8a45:E, 8a4d:A, 8a4d:B, 8a4d:C, 8a4d:D, 8a4d:E, 8a4d:F, 8a5k:A, 8a5k:B, 8a5k:C, 8a5k:D, 8a5k:E, 8a5k:F
17 7a9g:AAA 549 243 0.1576 0.0947 0.2140 0.020 7a9g:BBB, 7a9h:AAA, 7a9h:BBB, 8ogh:A, 8ogh:B
18 6hgg:A 339 176 0.1152 0.1121 0.2159 0.096 6ftp:A, 6hgf:A, 6hgi:A, 6hgk:A, 6hgl:A, 6hgm:A, 5om2:A, 5om3:A, 5om7:A
19 6grd:A 407 74 0.0667 0.0541 0.2973 0.41 5cnq:A, 5co8:C, 5co8:A, 6grb:A, 6grc:A
20 3st1:A 212 55 0.0485 0.0755 0.2909 1.4
21 2awn:B 374 81 0.0667 0.0588 0.2716 1.6 2awo:A, 2awo:B, 2awo:C, 4ki0:A, 4ki0:B, 3puv:A, 3puv:B, 3puw:A, 3puw:B, 3pux:A, 3pux:B, 3puy:A, 3puy:B, 3puz:A, 3puz:B, 1q12:A, 1q12:B, 1q12:C, 1q12:D, 2r6g:A, 2r6g:B, 3rlf:A, 3rlf:B
22 3e3r:A 183 86 0.0697 0.1257 0.2674 2.0 3e3r:B
23 3a4y:A 431 46 0.0636 0.0487 0.4565 2.3 3a4y:B, 3a4y:C, 3a4y:D, 2dkf:A, 2dkf:B, 2dkf:C, 2dkf:D, 3idz:A, 3idz:B, 3idz:C, 3idz:D, 3ie0:A, 3ie0:B, 3ie0:C, 3ie0:D, 3ie1:A, 3ie1:B, 3ie1:C, 3ie1:D, 3ie2:A, 3ie2:B, 3ie2:C, 3ie2:D, 3iek:A, 3iek:B, 3iek:C, 3iek:D, 3iel:A, 3iel:B, 3iel:C, 3iel:D, 3iem:A, 3iem:B, 3iem:D, 3iem:C
24 7f0d:S 113 32 0.0424 0.1239 0.4375 4.1 7kgb:S, 7msc:S, 7msh:S, 7msm:S, 7msz:S, 7mt2:S, 7mt3:S, 7mt7:S, 7sfr:S, 5v7q:S, 5v93:S
25 7yue:A 225 50 0.0424 0.0622 0.2800 4.2 8h3c:D, 8h3c:B
26 5b46:A 627 104 0.0758 0.0399 0.2404 4.7 5b47:A
27 3m34:A 632 38 0.0394 0.0206 0.3421 4.7 3m6l:A, 3m7i:A
28 7li0:A 312 99 0.0788 0.0833 0.2626 6.3 7li0:B, 7li1:A, 7li1:B, 7li1:C, 7li1:D
29 5nf3:A 497 42 0.0424 0.0282 0.3333 7.1 5nf2:A
30 8i0k:A 875 92 0.0758 0.0286 0.2717 9.5 8i0k:B, 7wgr:A, 7wgr:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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