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BioLiP
>protein
SLQNNQPVEFNHAINYVNKIKNRFQGQPDIYKAFLEILHTYQKEQRNAKEAGGNYTPALTEQEVYAQVARLFKNQEDLLS
EFGQFLPDA

The query sequence (length=89) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 1g1e:B 89 89 1.0000 1.0000 1.0000 5.13e-62 1s5q:B, 1s5r:B
2 1e91:A 85 82 0.5843 0.6118 0.6341 1.03e-31 1pd7:A
3 6xdj:A 441 83 0.5169 0.1043 0.5542 2.57e-21 6xaw:A, 6xdj:B
4 2czy:A 77 81 0.2809 0.3247 0.3086 3.45e-07
5 5y95:A 80 82 0.2697 0.3000 0.2927 9.81e-07
6 6ymv:A 887 30 0.1348 0.0135 0.4000 1.9
7 8c5s:A 924 30 0.1348 0.0130 0.4000 2.1 8ap1:A, 8att:A, 8atv:A, 8atw:A, 8c5u:A, 8q63:A, 6ymw:A
8 5hfi:A 202 15 0.1011 0.0446 0.6000 4.1
9 2azq:A 309 69 0.2135 0.0615 0.2754 4.3
10 8ow1:II 704 62 0.2135 0.0270 0.3065 5.7 8ovw:I
11 3q4r:A 170 58 0.1798 0.0941 0.2759 9.9 3q4o:A, 3q4q:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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