Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
SLQLWQFLVTLLDDPANAHFIAWTGRGMEFKLIEPEEVARRWGIQKNRPAMNYDKLSRSLRYYYEKGIMQKVAGERYVYK
FVCDPDALFSMAFPD

The query sequence (length=95) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 4uuv:A 96 95 0.9474 0.9375 0.9474 9.94e-66 4bnc:A, 4uno:A, 4uuv:D, 4uuv:G, 4uuv:J, 4uuv:M, 4uuv:P, 4uuv:S, 4uuv:V
2 6da1:B 138 89 0.5895 0.4058 0.6292 1.57e-38 4bqa:D, 4bqa:G, 6da1:A, 6dat:B, 6dat:C, 6dat:D, 6dat:A, 1k78:B, 1k78:F, 1k79:A, 1k79:D, 1k7a:A, 1k7a:D, 4l0y:B, 4l0z:B, 4l18:B, 4l18:F, 4lg0:B, 1mdm:B, 3mfk:A, 3mfk:B, 2nny:A, 2nny:B, 3ri4:A, 3ri4:D, 2stt:A, 2stw:A, 3wts:C, 3wts:H, 3wtt:C, 3wtt:H, 3wtu:C, 3wtu:H, 3wtv:C, 3wtv:H, 3wtw:C, 3wtw:H, 3wtx:C, 3wtx:H, 3wty:C, 3wty:H, 3wu1:B, 5zmc:B
3 4bqa:A 132 91 0.5789 0.4167 0.6044 4.94e-38
4 6vgd:A 98 80 0.5474 0.5306 0.6500 4.81e-35 5e8g:A, 5e8g:B, 5e8g:C, 5e8g:D, 5e8i:A, 5e8i:D, 5e8i:G, 5e8i:J, 4iri:A, 5jvt:A, 5jvt:D, 5jvt:G, 6vg2:A, 6vg2:D, 6vg8:A, 6vge:A, 6vgg:A, 5ybd:A, 5ybd:X
5 1dux:C 86 86 0.5368 0.5930 0.5930 7.07e-35 1dux:F
6 3zp5:A 92 80 0.5579 0.5761 0.6625 1.42e-34
7 1awc:A 110 89 0.5158 0.4455 0.5506 2.25e-31
8 1hbx:G 112 74 0.4737 0.4018 0.6081 5.38e-30 1bc7:C, 1bc8:C, 1hbx:H, 1k6o:A
9 7jsa:J 88 81 0.4421 0.4773 0.5185 1.74e-25 7jsl:J, 7jsl:E, 7jsl:H, 7jsl:L
10 8bzm:H 88 84 0.4316 0.4659 0.4881 4.09e-23 8bzm:B
11 1yo5:C 88 84 0.4737 0.5114 0.5357 9.63e-22
12 8e67:F 97 88 0.3684 0.3608 0.3977 3.28e-20 8e66:A, 8e66:F, 8e67:A, 8e67:I, 8e67:L, 4mhg:A
13 3jtg:A 95 88 0.3684 0.3684 0.3977 1.07e-15
14 8eo4:F 95 87 0.3263 0.3263 0.3563 4.64e-09 8e3k:F, 8e3r:F, 8e4h:F, 8e5y:F, 8ebh:F, 8ee9:F, 8ej6:F, 8ej8:F, 8ek3:F, 8ek8:F, 8ek8:E, 8ekj:F, 8eku:F, 8ekv:F, 8ekz:F, 8em9:F, 8emd:F, 8eng:F, 8eo1:F, 8eqg:F, 8eqk:F, 8eql:F, 8evh:O, 8evi:O, 8evj:O, 1pue:E, 1pue:F, 8smh:F, 8smj:F, 8sp1:F, 8t9u:F, 8vdh:F, 8vdi:F
15 5g3z:A 215 44 0.1474 0.0651 0.3182 0.34 5g40:A, 5g41:A
16 3fb4:A 215 45 0.1263 0.0558 0.2667 0.64
17 5a96:A 249 65 0.1789 0.0683 0.2615 1.4 8qph:A, 8qqc:A
18 7y60:L 354 51 0.1474 0.0395 0.2745 2.0
19 7bpo:A 165 63 0.1789 0.1030 0.2698 3.6 7bpo:B, 7br1:A, 7br1:B
20 6svf:A 229 54 0.1789 0.0742 0.3148 4.7 6ggv:A, 6ggv:B, 4psh:A, 4psh:B, 6q3u:A
21 3bo1:A 442 61 0.2000 0.0430 0.3115 4.9 3dkn:A, 4v4n:AX, 4v7i:AA
22 3gjb:B 271 33 0.1474 0.0517 0.4242 5.2 3gjb:A
23 6c33:A 317 46 0.1474 0.0442 0.3043 5.4 6c34:A, 6c35:A, 6c36:A
24 5yly:B 269 66 0.1895 0.0669 0.2727 7.7 5yly:A
25 8b1r:B 1170 55 0.1789 0.0145 0.3091 8.1 3k70:B, 3k70:E, 5ld2:B, 7mr4:B, 1w36:B, 1w36:E
26 8b1t:B 1141 55 0.1789 0.0149 0.3091 8.2 8b1u:B, 7mr3:B, 6sjb:B, 6sje:B, 6sjf:B, 6sjg:B, 6t2u:B, 6t2v:B
27 7aih:X 468 55 0.1789 0.0363 0.3091 8.7 7ane:X
28 7a99:B 130 54 0.1789 0.1308 0.3148 9.6 7a99:A, 6gpc:A, 6gpc:B

[Back]
Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

    • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218