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TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
SLPACPEESPLLVGPMLIEFNMPVDLELVAKQNPNVKMGGRYAPRDCVSPHKVAIIIPFRNRQEHLKYWLYYLHPVLQRQ
QLDYGIYVINQAGDTIFNRAKLLNVGFQEALKDYDYTCFVFSDVDLIPMNDHNAYRCFSQPRHISVAMDKFGFSLPYVQY
FGGVSALSKQQFLTINGFPNNYWGWGGEDDDIFNRLVFRGMSISRPNAVVGTTRHIRHSRDKKNEPNPQRFDRIAHTKET
MLSDGLNSLTYQVLDVQRYPLYTQITVDIGTPS

The query sequence (length=273) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 2agd:A 273 273 1.0000 1.0000 1.0000 0.0 2ae7:A, 2ae7:B, 2ae7:C, 2aec:A, 2aec:B, 2aec:C, 2aes:A, 2aes:B, 2aes:C, 2agd:B, 2agd:C, 2ah9:A, 2ah9:B, 2ah9:C, 3ee5:A, 3ee5:B, 3ee5:C, 4ee3:A, 4ee3:B, 4ee3:C, 4ee4:A, 4ee4:B, 4ee4:C, 4ee5:A, 4ee5:B, 4ee5:C, 4eea:A, 4eea:B, 4eea:C, 4eeg:A, 4eeg:B, 4eeg:C, 4eem:A, 4eem:B, 4eem:C, 4eeo:A, 4eeo:B, 4eeo:C, 2fya:A, 2fyb:A, 2fyc:B, 2fyc:D, 4krv:A, 4krv:B, 1o0r:A, 1o0r:B, 1tvy:A, 1tvy:B, 1tw1:A, 1tw1:B, 1tw5:A, 1tw5:B
2 1fgx:B 273 273 0.8938 0.8938 0.8938 0.0 1fr8:A, 1fr8:B, 2fyd:B, 2fyd:D, 1nf5:B, 1nf5:D, 1nhe:B, 1nhe:D, 1nkh:B, 1nkh:D, 1nwg:B, 1nwg:D, 1o23:B, 1o23:D, 1oqm:B, 1oqm:D, 1pzy:B, 1pzy:D, 1yro:B, 1yro:D
3 4irq:C 249 209 0.2674 0.2932 0.3493 6.42e-35 4irp:A, 4irq:A, 4irq:B, 4irq:D
4 4irp:B 227 173 0.2308 0.2775 0.3642 6.65e-33
5 4lw3:A 242 228 0.2930 0.3306 0.3509 6.63e-30 3lw6:A, 4lw6:A, 4m4k:A
6 3j7a:F 257 40 0.0659 0.0700 0.4500 0.078 3jbn:F, 3jbo:F, 3jbp:F, 6okk:F, 8tpu:SF
7 7qix:G 261 51 0.0733 0.0766 0.3922 0.41 7qiz:w
8 7olc:SE 261 40 0.0659 0.0690 0.4500 1.5 7old:SE, 8oo0:SE, 5oql:m, 7r81:F2, 6rxu:Cb, 6rxv:Cb, 6rxx:Cb, 6rxz:Cb, 7z3n:SE, 7z3o:SE
9 8jiw:BE 263 40 0.0623 0.0646 0.4250 1.8 8auv:A, 8b2l:A1, 8ip8:ja, 8ip9:ja, 8ipa:ja, 8ipb:ja, 8r6f:E, 4v3p:SD, 4v7e:BE
10 2z86:C 603 45 0.0513 0.0232 0.3111 1.9 2z86:A, 2z86:B, 2z86:D, 2z87:A, 2z87:B
11 6zu5:SE0 257 23 0.0366 0.0389 0.4348 2.3
12 4v6w:AE 261 38 0.0623 0.0651 0.4474 3.5 6xu6:AE, 6xu7:AE, 6xu8:AE
13 3k1j:A 566 82 0.0806 0.0389 0.2683 4.0 3k1j:B
14 3nwa:A 608 81 0.0842 0.0378 0.2840 4.2 4hsi:C, 3nw8:B, 3nw8:A, 3nw8:C, 3nwa:B, 3nwa:C, 3nwa:D, 3nwd:C, 3nwf:A, 3nwf:B
15 8ux2:B 240 27 0.0403 0.0458 0.4074 4.5 8hte:A, 8htf:A, 8ux2:A, 8ux2:C
16 8c3a:CR 260 38 0.0623 0.0654 0.4474 5.1 8c3a:G, 8cq7:G, 8cq7:CR, 8cqw:G, 8cqw:CR, 8cre:G, 8cre:CR, 8oeq:G, 8oeq:CR, 7pzy:F, 7q08:F, 7q0f:F, 7q0p:F, 7q0r:F, 8q5i:F
17 6zj3:SE 265 50 0.0696 0.0717 0.3800 6.2
18 1hqf:A 314 68 0.0513 0.0446 0.2059 7.4 1d3v:A, 1d3v:B, 3e8q:A, 3e8q:B, 3e8q:C, 3e8z:A, 3e8z:B, 3e8z:C, 3e9b:A, 3e9b:B, 3e9b:C, 1hq5:A, 1hq5:B, 1hqf:B, 1hqf:C, 1hqg:A, 1hqg:B, 1hqg:C, 1hqh:A, 1hqh:B, 1hqh:C, 1hqx:A, 1hqx:B, 1hqx:C, 1p8m:A, 1p8m:B, 1p8m:C, 1p8n:A, 1p8n:B, 1p8n:C, 1p8o:A, 1p8o:B, 1p8o:C, 1p8p:A, 1p8p:B, 1p8p:C, 1p8q:A, 1p8q:B, 1p8q:C, 1p8r:A, 1p8r:B, 1p8s:A, 1p8s:B, 1p8s:C, 1r1o:A, 1r1o:B, 1r1o:C, 1rla:A, 1rla:B, 1rla:C, 2rla:A, 2rla:B, 2rla:C, 3rla:A, 3rla:B, 3rla:C, 4rla:A, 4rla:B, 4rla:C, 5rla:A, 5rla:B, 5rla:C, 1t4p:A, 1t4p:B, 1t4p:C, 1t4r:A, 1t4r:B, 1t4r:C, 1t4s:A, 1t4s:B, 1t4s:C, 1t4t:A, 1t4t:B, 1t4t:C, 1t5f:A, 1t5f:B, 1t5f:C, 1t5g:A, 1t5g:B, 1t5g:C, 1ta1:A, 1ta1:B, 1ta1:C, 1tbh:A, 1tbh:B, 1tbh:C, 1tbj:A, 1tbj:B, 1tbj:C, 1tbl:A, 1tbl:B, 1tbl:C, 1zpe:A, 1zpe:B, 1zpe:C, 1zpg:A, 1zpg:B, 1zpg:C
19 8bn3:S4 260 38 0.0623 0.0654 0.4474 7.5 7a1g:S, 7ajt:DE, 7aju:DE, 7b7d:S, 8bqd:S, 8bqx:S, 8c00:S, 8c01:S, 8c83:S, 8cah:S, 8cas:S, 8cbj:E, 8ccs:h, 8cdl:h, 8cdr:h, 8ceh:h, 8cf5:h, 8cg8:h, 8cgn:h, 8civ:h, 8cku:h, 8cmj:h, 7d4i:SF, 7d5t:SF, 7d63:SF, 5dat:S4, 5dat:s4, 5dc3:S4, 5dc3:s4, 5dge:S4, 5dge:s4, 5dgf:S4, 5dgf:s4, 5dgv:S4, 5dgv:s4, 6eml:S, 8eub:BE, 8evp:BE, 8evq:BE, 8evr:BE, 8evs:BE, 8evt:BE, 8ewb:BE, 8ewc:BE, 6fai:E, 5fci:S4, 5fci:s4, 5fcj:S4, 5fcj:s4, 6fyx:E, 6fyy:E, 6gq1:u, 6gqb:u, 6gqv:u, 6gsm:E, 6gsn:E, 6hhq:F, 6hhq:s4, 5i4l:S4, 5i4l:s4, 6i7o:Sb, 6i7o:S, 8i7j:E, 5it7:E, 5it9:E, 3j6x:S4, 3j6y:S4, 3j77:S4, 3j78:S4, 3j80:E, 3j81:E, 3jam:E, 3jap:E, 5juo:BB, 5jup:BB, 5jus:BB, 5jut:BB, 5juu:BB, 8k2d:SE, 8k82:SE, 6ke6:SF, 5ll6:S, 6lqp:SF, 6lqq:SF, 6lqr:SF, 6lqs:SF, 6lqt:SF, 6lqu:SF, 6lqv:SF, 5lyb:S4, 5lyb:s4, 5m1j:E2, 5mc6:S, 5mei:s4, 5mei:F, 7mpi:BE, 7mpj:BE, 7n8b:BE, 5ndg:S4, 5ndg:s4, 5ndv:S4, 5ndv:s4, 5ndw:S4, 5ndw:s4, 7nrc:SS, 7nrd:SS, 5obm:S4, 5obm:s4, 5on6:s4, 5on6:F, 7osa:eS4, 7osm:eS4, 6q8y:S, 6rbd:E, 6rbe:E, 7rr5:SE, 8rw1:E, 6s47:BF, 8s8d:E, 8s8e:E, 8s8f:E, 8s8g:E, 8s8h:E, 8s8i:E, 8s8j:E, 6snt:E, 7suk:L4, 6sv4:Sb, 6sv4:S, 6sv4:Sc, 6t4q:SE, 6t7i:SE, 6t7t:SE, 6t83:Eb, 6t83:f, 5tbw:F, 5tbw:s4, 6tb3:S, 5tga:S4, 5tga:s4, 5tgm:S4, 5tgm:s4, 6tnu:S, 5tzs:5, 4u3m:S4, 4u3m:s4, 4u3n:S4, 4u3n:s4, 4u3u:S4, 4u3u:s4, 4u4n:S4, 4u4n:s4, 4u4o:S4, 4u4o:s4, 4u4q:S4, 4u4q:s4, 4u4r:S4, 4u4r:s4, 4u4u:S4, 4u4u:s4, 4u4y:S4, 4u4y:s4, 4u4z:S4, 4u4z:s4, 4u50:S4, 4u50:s4, 4u51:S4, 4u51:s4, 4u52:S4, 4u52:s4, 4u53:S4, 4u53:s4, 4u55:S4, 4u55:s4, 4u56:S4, 4u56:s4, 4u6f:S4, 4u6f:s4, 4uer:W, 6uz7:E, 4v6i:AD, 4v88:AE, 4v88:CE, 4v8y:AE, 4v8z:AE, 4v92:BE, 6wdr:E, 5wlc:L4, 6woo:EE, 7wtl:SE, 7wtm:SE, 7wtn:SE, 7wto:SE, 7wtp:SE, 7wtq:SE, 7wtr:SE, 5wyj:SF, 5wyk:SF, 6xiq:u, 6xir:u, 8y0u:SE, 6y7c:E, 6z6j:SE, 6z6k:SE, 6zce:F, 7zpq:AE, 6zqb:DE, 6zqc:DE, 6zqd:DE, 6zqe:DE, 6zqf:DE, 6zqg:DE, 7zrs:AE, 6zu9:S, 7zuw:AE, 7zux:DE, 6zvi:m, 7zw0:sS
20 8smr:G 312 39 0.0623 0.0545 0.4359 7.8
21 8ova:A1 262 51 0.0733 0.0763 0.3922 9.9 8ove:A1, 4v8m:A1

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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