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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
SLNTEIEMNELLEKAKKIKCLICDVDGVLSDGLLHIDNHGNELKSFHVQDGMGLKLLMAAGIQVAIITTAQNAVVDHRME
QLGITHYYKGQVDKRSAYQHLKKTLGLNDDEFAYIGDDLPDLPLIQQVGLGVAVSNAVPQVLEFADWRTERTGGRGAVRE
LCDLILNAQNKAELAITGYLKQ

The query sequence (length=182) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 3n1u:A 182 182 1.0000 1.0000 1.0000 3.55e-134
2 3n07:A 179 174 0.4670 0.4749 0.4885 1.43e-52 3n07:B, 3n07:C, 3n07:D
3 4um7:A 175 172 0.4560 0.4743 0.4826 2.96e-52 4um5:A, 4um5:B, 4um5:C, 4um5:D, 4um7:B, 4um7:C, 4um7:D, 4ume:A, 4umf:A, 4umf:B, 4umf:C, 4umf:D
4 3hyc:A 181 162 0.4341 0.4365 0.4877 4.54e-50 3hyc:B, 3hyc:C, 3hyc:D, 3hyc:E, 3hyc:F, 3hyc:G, 3hyc:H, 3i6b:A, 3i6b:B, 3i6b:C, 3i6b:D, 2r8e:A, 2r8e:B, 2r8e:C, 2r8e:D, 2r8e:E, 2r8e:F, 2r8e:G, 2r8e:H, 2r8y:A, 2r8y:B, 2r8y:C, 2r8y:D, 2r8y:E, 2r8y:F, 2r8y:G, 2r8y:H, 2r8y:I, 2r8y:J, 2r8y:K, 2r8y:L, 2r8y:M, 2r8y:N, 2r8y:O, 2r8y:P, 2r8z:A, 2r8z:B, 2r8z:C, 2r8z:D, 2r8z:E, 2r8z:F, 2r8z:G, 2r8z:H, 2r8z:I, 2r8z:J, 2r8z:K, 2r8z:L, 2r8z:M, 2r8z:N, 2r8z:O, 2r8z:P
5 3nrj:I 177 177 0.4396 0.4520 0.4520 8.58e-49 3nrj:A, 3nrj:B, 3nrj:C, 3nrj:D, 3nrj:E, 3nrj:F, 3nrj:G, 3nrj:H, 3nrj:J, 3nrj:K, 3nrj:L
6 4hgp:A 179 172 0.4011 0.4078 0.4244 2.12e-40 1k1e:A, 1k1e:B, 1k1e:C, 1k1e:D, 1k1e:E, 1k1e:F, 1k1e:G, 1k1e:H, 1k1e:I, 1k1e:J, 1k1e:K, 1k1e:L
7 4hgn:A 165 155 0.2912 0.3212 0.3419 1.76e-29 4hgn:B, 4hgn:C, 4hgn:D
8 3e81:A 164 151 0.3022 0.3354 0.3642 7.91e-29 3e81:B, 3e81:D, 3e81:C, 3e84:A, 3e84:B, 3e84:C, 3e84:D, 3e8m:A, 3e8m:B, 3e8m:C, 3e8m:D, 4hgo:A, 4hgo:B, 4hgo:C, 4hgo:D, 4hgq:A, 4hgq:B, 4hgq:C, 4hgq:D, 4hgq:E, 4hgq:F, 4hgq:G, 4hgq:H, 4hgr:A, 4hgr:B, 4hgr:C, 4hgr:D, 4hgr:E, 4hgr:F, 4hgr:G, 4hgr:H
9 3mmz:D 174 159 0.2912 0.3046 0.3333 4.10e-19 3mmz:A, 3mmz:B, 3mmz:C
10 1rkq:A 271 77 0.1429 0.0959 0.3377 6.64e-07 1rkq:B
11 4dwo:A 268 76 0.1429 0.0970 0.3421 0.002 3niw:A
12 1nf2:A 267 56 0.1044 0.0712 0.3393 0.002 1nf2:B, 1nf2:C
13 1nrw:A 285 58 0.1209 0.0772 0.3793 0.042
14 3r4c:A 268 51 0.0934 0.0634 0.3333 0.084
15 2b1q:A 244 60 0.1044 0.0779 0.3167 0.37 2b1r:A, 2d2v:A, 1s2o:A, 1tj3:A, 1tj4:A, 1tj5:A, 1u2s:A, 1u2t:A
16 1kyt:A 225 88 0.1264 0.1022 0.2614 0.63 1kyt:B, 1l6r:A, 1l6r:B
17 3kjg:A 254 86 0.1484 0.1063 0.3140 0.77 3kjg:B, 3kjh:A, 3kji:A, 3kji:B
18 1f5s:A 210 117 0.1538 0.1333 0.2393 0.84 1f5s:B, 1j97:A, 1j97:B, 1l7m:A, 1l7m:B, 1l7n:A, 1l7n:B, 1l7o:A, 1l7o:B, 1l7p:A, 1l7p:B
19 7r0h:A 654 34 0.0659 0.0183 0.3529 3.1 3a1c:A, 3a1c:B, 3a1d:A, 3a1d:B, 3a1e:A, 3a1e:B
20 8ioy:A 816 128 0.1593 0.0355 0.2266 3.4
21 8q74:A 783 148 0.1758 0.0409 0.2162 3.9 8q75:A, 8q76:A
22 4umv:A 605 48 0.0769 0.0231 0.2917 4.5 4umw:A
23 3sky:A 261 90 0.1264 0.0881 0.2556 4.7
24 1b1x:A 689 29 0.0714 0.0189 0.4483 7.0 1b7z:A, 3cr9:A, 1f9b:A, 1qjm:A
25 3by9:A 259 25 0.0714 0.0502 0.5200 7.1
26 2b30:A 284 75 0.0934 0.0599 0.2267 8.4 2b30:B, 2b30:C, 2b30:D
27 8a1z:A 396 53 0.0879 0.0404 0.3019 8.6 8a21:A, 5is2:A, 5it0:A, 5it4:A, 5jjb:A, 5jlp:A, 5jlr:A, 5jma:A, 3p96:A, 5t41:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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