Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
SLLDPLTQLWNRAGFHALHQHELELARASDQRIGIIYSDIDHFKRINDTLGHRAGDSVLREAASRLRAALRPEDLLARFG
GEEFVAMVRVRETTELTMIANRIRELMEATPIDCAGTSVPVTISAGCTLAGSGEEPERALARADAALYDAKRAGRNRVVS
V

The query sequence (length=161) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 4zmm:A 164 161 1.0000 0.9817 1.0000 4.15e-116 4zmm:B
2 3ign:A 166 162 0.3913 0.3795 0.3889 5.75e-30
3 4wxw:A 165 157 0.4161 0.4061 0.4268 1.18e-28
4 4zvf:A 164 157 0.3416 0.3354 0.3503 2.78e-27
5 2v0n:A 459 162 0.4099 0.1438 0.4074 3.12e-25 2v0n:B, 1w25:A, 1w25:B, 2wb4:A, 2wb4:B
6 6hbz:B 270 141 0.3354 0.2000 0.3830 6.70e-25 6hbz:A, 6hc0:D, 6hc1:A
7 8wcn:A 379 158 0.4037 0.1715 0.4114 1.64e-24 8wcn:B
8 7e6g:A 264 159 0.3602 0.2197 0.3648 2.60e-24
9 5euh:A 164 159 0.3851 0.3780 0.3899 2.83e-23 5euh:B
10 5m3c:B 426 157 0.3540 0.1338 0.3631 1.96e-22 5m3c:A
11 3i5c:B 198 161 0.3478 0.2828 0.3478 1.14e-21 3i5c:A, 1ij0:A, 1ij0:B, 1ij0:C, 1ij1:A, 1ij1:B, 1ij1:C, 3k7z:A, 3k7z:B, 1rb4:A, 1rb4:B, 1swi:C, 6xne:C
12 7a7e:B 176 155 0.3727 0.3409 0.3871 1.67e-21 7a7e:A, 7a7e:C
13 5xgd:A 548 156 0.3602 0.1058 0.3718 1.75e-21 8pps:A, 8pps:B, 5xge:A
14 4urs:A 162 149 0.3106 0.3086 0.3356 4.58e-21 4urg:A, 4urs:B
15 4h54:A 274 138 0.2919 0.1715 0.3406 4.70e-21 4h54:B, 3t9o:A, 3tvk:A
16 6zxb:A 293 162 0.3230 0.1775 0.3210 5.23e-21 6zxb:B, 6zxc:A, 6zxc:B, 6zxc:C, 6zxc:D, 6zxm:A, 6zxm:B, 6zxm:C, 6zxm:D, 6zxm:E, 6zxm:F
17 5llw:B 673 159 0.3292 0.0788 0.3333 1.07e-20 5llw:A, 5llx:A, 5llx:B, 5lly:D, 5lly:A, 5lly:C, 5lly:B, 6saw:A, 6saw:B, 6saw:C, 6saw:D, 6saw:E, 6saw:F, 6saw:G, 6saw:H, 6sax:B, 6sax:A
18 6et7:A 646 159 0.3292 0.0820 0.3333 1.13e-20 6et7:B
19 3bre:B 328 161 0.3478 0.1707 0.3478 1.40e-20 3bre:A
20 3i5a:A 319 162 0.3540 0.1787 0.3519 2.32e-19
21 6ttr:B 195 163 0.3665 0.3026 0.3620 6.55e-19 6ttr:A, 6tts:A, 6tts:B
22 6d9m:A 326 161 0.3292 0.1626 0.3292 1.55e-17
23 8c05:A 305 162 0.3478 0.1836 0.3457 1.83e-17
24 3qyy:B 156 159 0.3168 0.3269 0.3208 3.48e-17 3qyy:A
25 5euh:D 142 156 0.3354 0.3803 0.3462 1.72e-16 5euh:C
26 4rnh:A 423 158 0.3354 0.1277 0.3418 1.68e-15
27 6pwj:A 408 104 0.1863 0.0735 0.2885 5.17e-05 6pwj:B, 6pwk:A, 6pwk:B
28 2wyh:A 905 133 0.1801 0.0320 0.2180 2.5 2wyh:B, 2wyi:A, 2wyi:B
29 5sy7:B 276 74 0.1366 0.0797 0.2973 3.1
30 6lrt:A 423 47 0.0994 0.0378 0.3404 5.2 6lrt:D, 6lrt:G, 6lrt:J, 6lrt:M, 6lrt:P, 6lrt:S, 6lrt:V
31 7sfj:A 284 47 0.0994 0.0563 0.3404 5.5 7sfj:B, 7sfj:C, 7sfk:A, 7sfk:B, 7sfk:C, 7w9w:A
32 1wz2:A 948 99 0.1615 0.0274 0.2626 5.7 1wz2:B
33 4zyj:D 392 114 0.2236 0.0918 0.3158 9.9 4zyj:A, 4zyj:B, 4zyj:C

[Back]

Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218