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BioLiP
>protein
SLKKLDYHFHSHFSADSEELPRKHVTEAIAHGLEEICFTEHRDFYFPGMDFSLNLPEYFQEINQLQAEFKDKIKIKIGLE
MGIDLRFKSEINQFIDSAPFDFVIASVHEIGDIEVYDGTEFYLQKTKEEAQREYLLACLDVVQNFENYNSFGHLDYVARY
GPYTDKSIKFAENREILFEILRALASKEKALEINTRLFDDPKTEQFYSDLLINFKRLGGKFITLGTDSHIAKRDWLSIHK
ARTLIKKAGFHELATFSGMKIDK

The query sequence (length=263) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 4gc3:A 263 263 1.0000 1.0000 1.0000 0.0 4gk8:A, 4gyf:A
2 2yxo:B 265 254 0.2510 0.2491 0.2598 2.52e-16 2yxo:A, 2yz5:A, 2yz5:B, 2z4g:A, 2z4g:B
3 3e38:B 343 41 0.0684 0.0525 0.4390 0.41 3e38:A
4 8rth:A 666 160 0.1483 0.0586 0.2437 0.57 8rth:C, 8rth:E, 8rth:G, 8rth:I, 8rth:K
5 6pmp:C 617 38 0.0494 0.0211 0.3421 1.2 6pmp:A, 6pmp:B, 6pmp:D
6 7o91:A 146 51 0.0608 0.1096 0.3137 1.4 1j30:A, 1j30:B, 7o8a:A, 7o8a:B, 7o8a:C, 7o8d:A, 7o8d:B, 7o90:A, 7o90:B, 7o91:B, 7o91:C, 7o93:A, 7o93:B, 7o99:A, 7o99:B, 7o9d:A, 7o9d:B, 7ppt:A, 7ppt:B, 7ppu:A, 7ppu:B, 7ppv:A, 7ppv:B
7 6kr6:A 713 100 0.1027 0.0379 0.2700 1.4
8 3hqp:A 498 61 0.0684 0.0361 0.2951 2.2 3hqo:K, 3hqo:A, 3hqo:B, 3hqo:C, 3hqp:B, 3hqp:C, 3hqp:D, 3hqp:E, 3hqp:F, 3hqp:G, 3hqp:H, 3hqp:I, 3hqp:J, 3hqp:K, 3hqp:L, 3hqp:M, 3hqp:N, 3hqp:O, 3hqp:P, 3hqq:A, 3hqq:B, 3hqq:C, 3hqq:D, 3hqq:E, 3hqq:F, 3hqq:G, 3hqq:H, 3hqq:I, 3hqq:J, 3hqq:K, 3hqq:L, 3hqq:M, 3hqq:N, 3hqq:O, 3hqq:P, 3hqq:Q, 3hqq:R, 3hqq:S, 3hqq:T, 3hqq:U, 3hqq:V, 3hqq:W, 3hqq:X, 3pp7:B, 3qv6:A, 3qv7:D, 3qv7:A, 3qv8:D, 3srk:A
9 3rhg:A 363 53 0.0798 0.0579 0.3962 2.5 4qsf:A
10 3wqy:A 905 141 0.1369 0.0398 0.2553 3.8 3wqy:B, 3wqz:A, 3wqz:B, 2ztg:A
11 6zu5:LX0 98 52 0.0532 0.1429 0.2692 3.8
12 3p5r:A 750 182 0.1711 0.0600 0.2473 4.7 3p5p:A, 3p5r:B
13 3guh:A 477 150 0.1141 0.0629 0.2000 6.4 3cop:A, 3cx4:A, 2qzs:A, 2r4t:A, 2r4u:A
14 3srk:B 405 75 0.0760 0.0494 0.2667 6.9 3qv7:B, 3qv8:A
15 2w5v:A 346 83 0.0951 0.0723 0.3012 7.1 2iuc:A, 2iuc:B, 2w5v:B, 2w5w:A, 2w5w:B, 2w5x:A, 2w5x:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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