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BioLiP
>protein
SLIRIGHGFDVHAFGEDRPLIIGGVEVPYHTGFIAHSDGDVALHALTDAILGAAALGDIGKLFPNADSRGLLREAFRQVQ
EKGYKIGNVDITIIAQAPKMRPHIDAMRAKIAEDLQCDIEQVNVKATTTEKLGFTGRQEGIACEAVALLIRQ

The query sequence (length=152) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 1jn1:A 157 157 0.9803 0.9490 0.9490 5.65e-105 1jn1:B, 1jn1:C, 1vh8:A, 1vh8:B, 1vh8:C, 1vh8:D, 1vh8:E, 1vh8:F, 1vha:A, 1vha:B, 1vha:C, 1vha:D, 1vha:E, 1vha:F
2 3fpi:A 161 158 0.7434 0.7019 0.7152 9.13e-78
3 3esj:A 162 156 0.7632 0.7160 0.7436 3.81e-73 2amt:A, 2amt:B, 2amt:C, 2amt:D, 2amt:F, 2amt:E, 3elc:A, 3elc:B, 3elc:C, 3eor:A, 3ern:A, 3ern:B, 3ern:C, 3ern:D, 3ern:E, 3ern:F, 3fba:A, 3ghz:A, 3ghz:B, 3ghz:C, 1gx1:A, 1gx1:C, 1gx1:B, 2gzl:A, 1h47:A, 1h47:B, 1h47:C, 1h47:D, 1h47:E, 1h47:F, 1h48:A, 1h48:F, 1h48:C, 1h48:B, 1h48:D, 1h48:E, 1jy8:A, 1knj:A, 1knk:A, 3t80:A, 3t80:B, 3t80:C, 3t80:D, 3t80:E, 3t80:F, 1u3l:A, 1u3p:A, 1u40:A, 1u43:A, 1yqn:A
4 1t0a:A 158 157 0.6974 0.6709 0.6752 7.26e-72 1t0a:B, 1t0a:C
5 5esv:G 187 190 0.8421 0.6845 0.6737 1.03e-71 5esv:E, 5esv:F
6 5b8f:C 164 155 0.6645 0.6159 0.6516 6.85e-67 5b8f:A, 5b8f:B
7 5iwx:A 158 155 0.5987 0.5759 0.5871 2.32e-59 5iwx:B, 5iwx:C, 5iwx:D, 5iwx:E, 5iwx:F, 5iwy:A, 5iwy:C, 5iwy:B, 5iwy:D, 5iwy:E, 5iwy:F
8 4c8e:A 161 157 0.6053 0.5714 0.5860 4.93e-59 4c8e:C, 4c8e:B, 4c8g:A, 4c8g:C, 4c8g:B, 4c8i:A, 4c8i:B, 4c8i:C, 3f0d:B, 3k2x:A, 3mbm:B
9 3iew:A 160 157 0.6053 0.5750 0.5860 5.94e-59 3f0d:A, 3f0d:C, 3f0d:D, 3f0d:E, 3f0d:F, 3f0e:A, 3f0e:B, 3f0e:C, 3f0f:A, 3f0f:B, 3f0f:C, 3f0g:A, 3f0g:B, 3f0g:C, 3f0g:D, 3f0g:E, 3f0g:F, 3ieq:A, 3ieq:C, 3ieq:B, 3iew:C, 3iew:B, 3ike:A, 3ike:B, 3ike:C, 3ikf:A, 3ikf:B, 3ikf:C, 3jvh:A, 3jvh:B, 3jvh:C, 3k14:A, 3k14:B, 3k14:C, 3k2x:C, 3k2x:B, 3ke1:A, 3ke1:B, 3ke1:C, 5l03:A, 5l03:B, 5l03:C, 5l12:A, 5l12:B, 5l12:C, 3mbm:A, 3mbm:C, 6mwf:A, 6mwf:B, 6mwf:C, 6mwi:A, 6mwi:B, 6mwi:C, 6mwj:A, 6mwj:B, 6mwj:C, 6mwk:A, 6mwk:B, 6mwk:C, 6nmo:A, 6nmo:B, 6nmo:C, 3p0z:A, 3p0z:C, 3p0z:B, 3p10:A, 3p10:C, 3p10:B, 3q8h:A, 3q8h:B, 3q8h:C, 3qhd:A, 3qhd:C, 3qhd:B, 6v3m:A, 6v3m:B, 6v3m:C
10 3re3:B 144 149 0.5658 0.5972 0.5772 4.99e-52
11 1w55:A 369 148 0.5197 0.2141 0.5338 4.08e-49 1w57:A
12 2pmp:A 160 156 0.4671 0.4437 0.4551 4.34e-43
13 8xkf:C 377 156 0.4276 0.1724 0.4167 8.31e-34 8xhu:A, 8xhu:B, 8xhu:C, 8xkf:A, 8xkf:B, 8xkf:D, 8xkf:F, 8xkf:E
14 4c81:A 156 151 0.4211 0.4103 0.4238 3.51e-32 4c82:A
15 1iv2:A 150 136 0.3553 0.3600 0.3971 1.67e-28 1iv2:C, 1iv2:B, 1iv2:D, 1iv2:F, 1iv2:E, 1iv3:A, 1iv3:B, 1iv3:C, 1iv3:D, 1iv3:E, 1iv3:F, 1iv4:A, 1iv4:B, 1iv4:C, 1iv4:D, 1iv4:E, 1iv4:F
16 3b6n:A 150 157 0.3882 0.3933 0.3758 3.94e-25
17 2uzh:C 155 147 0.3684 0.3613 0.3810 6.53e-23 2uzh:A, 2uzh:B
18 5dst:C 317 83 0.1711 0.0820 0.3133 0.24 5dst:A, 5dst:B, 5dst:D, 5dst:E, 5dst:F, 5dst:G, 5dst:H, 5dst:I, 5dst:J, 5dst:K, 5dst:L, 5dst:M, 5dst:N, 5dst:O, 4x41:A
19 8hpk:A 390 72 0.1579 0.0615 0.3333 0.69
20 6oay:F 558 75 0.1184 0.0323 0.2400 3.2 6og2:F
21 4ciu:A 657 75 0.1184 0.0274 0.2400 3.2
22 6qs4:C 630 71 0.1184 0.0286 0.2535 4.1 5og1:C, 5og1:D, 6qs4:D, 6qs4:E, 6qs6:C, 6qs6:D, 6qs7:C, 6qs7:D, 6qs7:E, 6qs8:C, 6qs8:D, 6qs8:E
23 6rn4:F 680 71 0.1184 0.0265 0.2535 4.3 6rn3:F, 6rn4:A
24 6qs4:B 582 75 0.1184 0.0309 0.2400 4.6 6oax:C, 6oax:E, 6oax:D, 6oax:B, 6oax:A, 6oax:F, 6oay:C, 6oay:E, 6oay:D, 6oay:B, 6oay:A, 5og1:B, 6og1:F, 6og1:A, 6og2:A, 6qs4:A, 6qs4:F, 6qs6:A, 6qs6:B, 6qs6:E, 6qs6:F, 6qs7:A, 6qs7:B, 6qs7:F, 6qs8:A, 6qs8:B, 6qs8:F
25 9awj:B 408 44 0.0724 0.0270 0.2500 4.7
26 7of0:E 308 39 0.0855 0.0422 0.3333 5.2 7a5f:E3, 7a5g:E3, 7a5h:E, 7a5i:E3, 7a5j:E, 7a5k:E3, 8any:E, 6i9r:E, 3j7y:E, 3j9m:E, 8k2a:LC, 8k2b:LC, 7l08:E, 7l20:E, 6nu2:E, 6nu3:E, 7o9k:E, 7o9m:E, 7odr:E, 7ods:E, 7odt:E, 7of2:E, 7of3:E, 7of4:E, 7of5:E, 7of6:E, 7of7:E, 7og4:XE, 7oi6:E, 7oi7:E, 7oi8:E, 7oi9:E, 7oia:E, 7oib:E, 7oic:E, 7oid:E, 7oie:E, 8oir:BM, 8oit:BM, 5ool:E, 5oom:E, 7pd3:E, 8pk0:E, 7qh7:E, 7qi4:E, 7qi5:E, 7qi6:E, 8qsj:E, 8qu1:E, 8qu5:E, 6vlz:E, 6vmi:E, 8xt0:LC, 8xt1:LC, 8xt2:LC, 8xt3:LC, 6zm5:E, 6zm6:E, 6zs9:XE, 6zsa:XE, 6zsb:XE, 6zsc:XE, 6zsd:XE, 6zse:XE, 6zsg:XE
27 4ubt:A 396 92 0.1513 0.0581 0.2500 7.0 4ubt:B, 4ubt:C, 4ubt:D, 4ubu:A, 4ubu:B, 4ubu:C, 4ubu:D, 4ubu:E, 4ubu:F, 4ubu:G, 4ubu:H, 4ubv:A, 4ubv:B
28 5bxi:B 153 23 0.0592 0.0588 0.3913 7.1 5bxi:A, 5bxi:C, 5bxi:I
29 4cej:B 1156 34 0.0855 0.0112 0.3824 9.2 4ceh:B, 4cei:B, 3u44:B, 3u4q:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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