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BioLiP
>protein
SLIPEIDAFLGCPTPDAWIEAALADQETLLIDHKNCEFKAASTALSLIAKYNTHLDLINMMSRLAREELVHHEQVLRLMK
RRGVPLRPVSAGRYASGLRRLVRAHEPVKLVDTLVVGAFIEARSCERFAALVPHLDEELGRFYHGLLKSEARHYQGYLKL
AHNYGDEADIARRVELVRAAEMELIQSPDQELRFHSGIPQ

The query sequence (length=200) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 6zmb:C 200 200 1.0000 1.0000 1.0000 9.25e-148 8afj:B, 8afj:A, 2itb:A, 2itb:B, 6zma:B, 6zma:C, 6zmb:B, 6zmc:B, 6zmc:C
2 8fhc:B 215 205 0.5550 0.5163 0.5415 1.58e-71 8fhc:A
3 8fhb:A 204 192 0.3850 0.3775 0.4010 2.28e-36
4 5ux1:C 202 192 0.3750 0.3713 0.3906 1.39e-33 5ux1:A, 5ux1:B, 5ux1:D
5 3q4r:A 170 145 0.1800 0.2118 0.2483 1.25e-04 3q4o:A, 3q4q:A
6 2ltv:A 36 23 0.0550 0.3056 0.4783 0.19 2law:A
7 8tzh:A 1485 91 0.1350 0.0182 0.2967 2.4 3d6t:B
8 6c95:A 773 56 0.0900 0.0233 0.3214 3.2 6c9m:A, 6c9m:C, 6ppl:B, 6pw9:B
9 9f1b:DB 837 56 0.0900 0.0215 0.3214 3.4 9f1c:DB, 9f1d:DB, 9fpz:B, 9fq0:B
10 7o64:A 173 67 0.1000 0.1156 0.2985 3.5 7o63:A, 7o65:A, 7o66:A, 7o67:A, 7o68:A, 7o69:A, 7o6a:A, 7o6c:A, 7o6d:A, 7owy:A, 1r03:A, 5z8s:A, 5z8u:A, 5z8u:B, 5z91:A
11 6c3p:E 1359 30 0.0650 0.0096 0.4333 5.0 6c3p:H, 6c3p:G, 6c3p:F, 5ywb:B, 5ywb:D, 5ywb:F, 5ywb:H, 5ywc:B, 5ywc:D, 5ywc:F, 5ywc:H
12 6c3o:E 1290 30 0.0650 0.0101 0.4333 5.3 6c3o:H, 6c3o:G, 6c3o:F
13 7s5x:E 1412 30 0.0650 0.0092 0.4333 5.6 6pz9:C, 7s5v:E, 7s5y:E, 7s5z:E, 7s60:E, 7s61:E, 8ti1:E, 8ti1:H, 8ti1:G, 8ti1:F, 8ti2:E, 8ti2:H, 8ti2:G, 8ti2:F, 7w4o:B, 7w4o:D, 7w4o:F, 7w4o:H, 7w4p:B, 7w4p:D, 7w4p:F, 7w4p:H
14 4kvq:A 223 42 0.0850 0.0762 0.4048 5.6 4kvr:A, 4kvs:A, 2oc5:A, 4pg0:A, 4pg1:A, 4pgi:A, 4pgk:A, 4tw3:A
15 6upq:A 270 35 0.0600 0.0444 0.3429 7.5 3ftq:A, 7m6j:F, 6upr:A
16 5uxy:A 276 24 0.0450 0.0326 0.3750 8.7
17 3ftq:B 252 35 0.0600 0.0476 0.3429 8.7 3ftq:C, 3ftq:D, 2qnr:B, 6upa:A
18 8b2u:A 248 61 0.0850 0.0685 0.2787 9.1 8b1s:A, 1h2c:A, 1h2d:A, 1h2d:B, 7k5d:A, 7k5l:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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