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TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
SLINLKIQKENPKVVNEINIEDLSLTKAAYCRCWRSKTFPACDGSHNKHNELTGDNVGPLILKK

The query sequence (length=64) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 3fnv:B 68 64 1.0000 0.9412 1.0000 2.20e-43 3fnv:A, 4oo7:A, 4oo7:B, 4ooa:A, 4ooa:B, 4ooa:C, 4ooa:D, 4ooa:E, 4ooa:F, 7p0p:A, 7p0p:B, 7p0p:C, 7p0p:D
2 3ew0:A 77 64 0.6875 0.5714 0.6875 2.25e-29 6de9:A, 3ew0:B, 4ezf:A, 4ezf:B, 4f1e:A, 4f1e:B, 4f1e:C, 4f1e:D, 4f1e:E, 4f1e:F, 4f1e:G, 4f1e:H, 4f1e:I, 4f1e:J, 4f1e:K, 4f1e:L, 4f1e:M, 4f1e:N, 4f1e:O, 4f1e:P, 4f1e:Q, 4f1e:R, 4f28:A, 4f28:B, 4f2c:A, 4f2c:B, 3lpq:A, 3lpq:B, 7p0o:A, 7p0o:B, 2qd0:A, 2qd0:B, 2qh7:A, 2qh7:B, 2r13:A, 3ree:A
3 7yvz:A 63 60 0.5469 0.5556 0.5833 1.45e-21
4 3s2r:B 78 62 0.5625 0.4615 0.5806 1.41e-20 3s2q:A, 3s2q:B, 3s2r:A
5 3tbo:A 54 18 0.1562 0.1852 0.5556 0.17
6 3tbn:A 87 17 0.1719 0.1264 0.6471 0.20
7 3tbn:A 87 19 0.1562 0.1149 0.5263 4.0
8 3tbm:A 61 22 0.1719 0.1803 0.5000 0.35 3tbm:B
9 4ntc:A 325 44 0.2031 0.0400 0.2955 0.99 4ntc:B
10 8iu2:R 298 19 0.1562 0.0336 0.5263 1.1
11 4jn6:C 339 19 0.1406 0.0265 0.4737 1.3 4jn6:A
12 6avj:A 92 30 0.1875 0.1304 0.4000 2.3 6avj:B, 6avj:C
13 8bn0:A 342 32 0.2188 0.0409 0.4375 6.9 8bai:A, 8bai:B, 8bai:C, 8bai:D, 8baz:A, 8baz:B, 8bb0:A, 8bb0:B, 8bmy:A, 8bmy:B, 8bmz:A, 8bmz:B
14 6z1p:AV 129 37 0.2188 0.1085 0.3784 8.5
15 2qxf:A 433 24 0.1719 0.0254 0.4583 9.9

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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