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BioLiP
>protein
SLINLKIQKENPKVVNEINIEDLSLTKAAYCRCWRSKTFPACDGSCNKHNELTGDNVGPLILKKK

The query sequence (length=65) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 3fnv:B 68 65 0.9846 0.9412 0.9846 3.03e-42 3fnv:A, 4oo7:A, 4oo7:B, 4ooa:A, 4ooa:B, 4ooa:C, 4ooa:D, 4ooa:E, 4ooa:F, 7p0p:A, 7p0p:B, 7p0p:C, 7p0p:D
2 3ew0:A 77 65 0.6769 0.5714 0.6769 1.18e-28 6de9:A, 3ew0:B, 4ezf:A, 4ezf:B, 4f1e:A, 4f1e:B, 4f1e:C, 4f1e:D, 4f1e:E, 4f1e:F, 4f1e:G, 4f1e:H, 4f1e:I, 4f1e:J, 4f1e:K, 4f1e:L, 4f1e:M, 4f1e:N, 4f1e:O, 4f1e:P, 4f1e:Q, 4f1e:R, 4f28:A, 4f28:B, 4f2c:A, 4f2c:B, 3lpq:A, 3lpq:B, 7p0o:A, 7p0o:B, 2qd0:A, 2qd0:B, 2qh7:A, 2qh7:B, 2r13:A, 3ree:A
3 3s2r:B 78 63 0.5692 0.4744 0.5873 2.96e-22 3s2q:A, 3s2q:B, 3s2r:A
4 7yvz:A 63 60 0.5231 0.5397 0.5667 7.91e-20
5 6avj:A 92 31 0.2000 0.1413 0.4194 0.22 6avj:B, 6avj:C
6 8iu2:R 298 19 0.1538 0.0336 0.5263 0.72
7 4ntc:A 325 44 0.2000 0.0400 0.2955 3.5 4ntc:B
8 3tbn:A 87 16 0.1538 0.1149 0.6250 3.5
9 1mvm:A 549 28 0.1538 0.0182 0.3571 6.5 1z1c:A
10 3tbo:A 54 15 0.1231 0.1481 0.5333 6.6
11 8bn0:A 342 32 0.2154 0.0409 0.4375 7.2 8bai:A, 8bai:B, 8bai:C, 8bai:D, 8baz:A, 8baz:B, 8bb0:A, 8bb0:B, 8bmy:A, 8bmy:B, 8bmz:A, 8bmz:B
12 3tbm:A 61 19 0.1538 0.1639 0.5263 9.1 3tbm:B
13 2qxf:A 433 24 0.1692 0.0254 0.4583 9.9

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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