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BioLiP
>protein
SLIFCSECGNLLESTTAQWTTCDQCQSVYPSEQFANLVVETKSSASAFPSALKLKHS

The query sequence (length=57) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 7aoc:I 57 57 1.0000 1.0000 1.0000 9.87e-37 7aod:I, 7aod:U, 7aoe:I
2 5n5y:I 99 60 0.5088 0.2929 0.4833 8.76e-14 5n5z:I, 5n60:I
3 6hlq:I 111 60 0.5088 0.2613 0.4833 9.93e-14 5g5l:I, 6hls:I
4 4c2m:I 124 60 0.5088 0.2339 0.4833 1.03e-13 4c2m:X, 4c3h:I, 4c3i:I, 4c3j:I, 6h67:I, 6h68:I, 6hko:I, 6hlr:I, 5lmx:I, 5m3f:I, 5m3m:I, 5m5x:I, 5n61:I, 5oa1:I, 6rqt:I, 6ruo:I, 6rwe:I, 6tps:I, 5w5y:I, 5w64:I, 5w65:I, 5w66:I, 4ym7:AI, 4ym7:BI, 4ym7:CI, 4ym7:DI, 4ym7:EI, 4ym7:FI
5 3pfq:A 523 25 0.1930 0.0210 0.4400 0.32 1a25:A, 1a25:B, 2i0e:A, 2i0e:B
6 2eli:A 85 23 0.1754 0.1176 0.4348 0.38
7 7oba:I 105 42 0.2982 0.1619 0.4048 0.47 7ob9:I, 7obb:I
8 6uwa:A 187 25 0.1930 0.0588 0.4400 0.52 1dsy:A, 3gpe:A, 2nce:A, 3twy:A, 5w4s:A
9 5dp2:A 335 41 0.2105 0.0358 0.2927 0.53
10 1q3b:A 259 22 0.1579 0.0347 0.4091 0.54 2ea0:A, 6fbu:A, 1k3w:A, 1k3x:A, 2opf:A, 2oq4:A, 2oq4:B, 1q39:A, 1q3c:A
11 3uej:A 65 37 0.2456 0.2154 0.3784 1.7 7knd:A, 7knj:A, 7ko6:A, 7l92:A, 7l92:D, 7l92:G, 7l92:J, 7l92:M, 7l92:V, 7l92:P, 7l92:S, 7lcb:A, 7leo:A, 7leo:D, 7lf3:A, 1ptq:A, 1ptr:A, 3uej:B, 3uey:A, 3uey:B, 3uff:A, 3uff:B, 3ugd:A, 3ugd:B, 3ugi:A, 3ugi:B, 3ugl:A, 3ugl:B
12 2enz:A 65 22 0.1754 0.1538 0.4545 1.9
13 4fkd:A 65 22 0.1754 0.1538 0.4545 1.9
14 4yn0:A 168 37 0.2456 0.0833 0.3784 2.2
15 5hy7:B 1170 49 0.2982 0.0145 0.3469 3.4
16 5xxu:W 129 37 0.2105 0.0930 0.3243 4.2
17 3n9m:A 503 12 0.1228 0.0139 0.5833 5.3 3n9l:A, 3n9m:C, 3n9n:A, 3n9o:A, 3n9p:A, 3n9q:A, 3puq:A, 3puq:C, 3pur:A, 3pur:C
18 7nyc:D 487 13 0.1404 0.0164 0.6154 6.0 7nyd:D
19 3ojy:B 504 13 0.1404 0.0159 0.6154 6.0 8b0f:D
20 3qck:A 289 23 0.1579 0.0311 0.3913 8.4 3qce:A, 3qce:B, 3qcf:A, 3qcf:B, 3qcg:A, 3qch:A, 3qci:A, 3qcj:A, 3qcl:A, 3qcm:A, 3qcm:B
21 1tbn:A 66 23 0.1579 0.1364 0.3913 8.9 1tbo:A
22 6ra0:A 138 24 0.1404 0.0580 0.3333 9.6

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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