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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
SLFYNPQKMLSYDRILNFVIGARGIGKSYAMKVYPINRFIKYGEQFIYVRRYKPELAKVSNYFNDVAQEFPDHELVVKGR
RFYIDGKLAGWAIPLSVWQSEKSNAYPNVSTIVFDEFIREKDNSNYIPNEVSALLNLMDTVFRNRERVRCICLSNAVSVV
NPYFLFFNLVPDVNKRFNVYDDALIEIPDSLDFSSERRKTRFGRLIDGTEYGEMSLDNQFIGDSQVFIEKRSKDSKFVFS
IVYNGFTLGVWVDVNQGLMYIDTAHDPSTKNVYTLTTDDLNENMMLITNYKNNYHLRKLASAFMNGYLRFDNQVIRNIAY
ELFRKMR

The query sequence (length=327) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 7jqq:A 327 327 1.0000 1.0000 1.0000 0.0 7jqq:B, 7jqq:C, 7jqq:D, 7jqq:E
2 3e9q:B 256 71 0.0581 0.0742 0.2676 0.064 3f1k:A, 3gy0:A, 3gz4:A, 3gz4:B
3 1xex:A 166 105 0.0887 0.1747 0.2762 0.19 3kta:A, 3kta:C
4 6r5k:A 1040 56 0.0520 0.0163 0.3036 1.8 4q8h:A, 6r9m:A, 6r9p:A, 6r9q:A
5 6wou:A 3921 76 0.0612 0.0051 0.2632 2.8 6wou:B, 6wou:C, 6wou:D, 6wov:A, 6wov:B, 6wov:C, 6wov:D
6 1bih:A 391 62 0.0581 0.0486 0.3065 4.6 1bih:B
7 5i0x:B 158 91 0.0703 0.1456 0.2527 6.6 5i0x:A, 5i0y:A, 5i0y:B, 3nrq:A, 3nrq:B
8 1svu:A 307 141 0.1101 0.1173 0.2553 7.9
9 1zpu:A 529 53 0.0489 0.0302 0.3019 9.6 1zpu:B, 1zpu:C, 1zpu:D, 1zpu:E, 1zpu:F
10 7v02:F 650 38 0.0367 0.0185 0.3158 9.9

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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