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BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
SLANQIDQFLGTIMQFAENKHEILLGKCESDVKLTSTQEHILMLLAEQISTNAKIAEKLKISPAAVTKALKKLQEQELIK
SSRATNDERVVLWSLTEKAVPVAKEHATHHEKTLSTYQELGNKFTDEEQEVISKFLSALTEEFQ

The query sequence (length=144) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 5yhx:N 146 144 1.0000 0.9863 1.0000 5.67e-102 5yhx:A, 5yhx:B, 5yhx:G, 5yhx:H, 5yhx:M, 5yhx:S, 5yhx:T, 5yhy:A, 5yhz:A, 5yi0:B, 5yi0:A, 5yi0:C, 5yi0:D, 5yi2:A, 5yi2:B, 5yi2:E, 5yi2:F, 5yi2:I, 5yi2:J, 5yi2:M, 5yi2:N, 5yi3:A, 5yi3:B, 5yi3:E, 5yi3:F, 5yi3:I, 5yi3:J, 5yi3:M, 5yi3:N
2 6fi9:A 144 144 0.8681 0.8681 0.8681 1.53e-90 6fi9:B, 6fi9:C, 6fi9:D, 6fi9:E, 6fi9:F, 6fi9:G, 6fi9:H
3 3tgn:B 146 143 0.4861 0.4795 0.4895 6.73e-40 3tgn:A
4 5jlu:A 137 144 0.4444 0.4672 0.4444 5.90e-36 5jls:A
5 4xrf:A 142 85 0.1806 0.1831 0.3059 6.53e-06
6 7el3:A 138 113 0.2222 0.2319 0.2832 1.77e-05 7el3:B
7 1z9c:C 138 77 0.2014 0.2101 0.3766 4.35e-05 1z9c:A, 1z9c:B, 1z9c:D, 1z9c:E, 1z9c:F
8 4kdp:A 151 122 0.2083 0.1987 0.2459 1.05e-04 4ejv:A, 4ejv:B, 4ejw:A, 4ejw:B, 4kdp:B, 4kdp:C, 4kdp:D, 3kp2:A, 3kp2:B, 3kp3:B, 3kp4:A, 3kp4:B, 3kp5:A, 3kp5:B
9 6jbx:A 146 91 0.1597 0.1575 0.2527 0.002 6jbx:B
10 3hru:A 211 35 0.1181 0.0806 0.4857 0.044 3hru:B
11 6c2s:A 142 93 0.1944 0.1972 0.3011 0.045 6c28:A, 6c28:D, 6c28:B, 6c28:C, 6c2s:D, 6c2s:B, 6c2s:C
12 8pw0:A 137 51 0.1458 0.1533 0.4118 0.054
13 5hli:A 146 59 0.1181 0.1164 0.2881 0.25 5hlg:A, 5hlg:B, 5hlg:C, 5hlg:D, 5hlg:E, 5hlg:F, 5hlg:G, 5hlg:H, 5hlh:A, 5hlh:B, 5hlh:C, 5hlh:D, 5hlh:E, 5hlh:F, 5hlh:G, 5hlh:H, 5hli:B
14 9c4d:E 140 74 0.1528 0.1571 0.2973 0.34 9c4c:E, 9c4c:F, 9c4c:G, 9c4c:H, 9c4d:F, 9c4d:G, 9c4d:I, 9c4d:D, 9c4d:H, 9c4d:J, 9c4d:C, 2ev0:A, 2ev0:B, 2ev5:A, 2ev5:B, 2ev6:A, 2ev6:B, 2f5c:A, 2f5d:A, 2f5d:B, 2f5e:A, 2f5e:B, 2f5f:A, 2f5f:B, 4hv5:A, 4hv5:B, 4hv6:A, 4hv6:B, 4hx4:A, 4hx4:B, 1on1:A, 1on1:B, 1on2:A, 1on2:B, 3r60:A, 3r60:B, 3r61:A, 3r61:B
15 3ech:B 135 111 0.1806 0.1926 0.2342 0.35 3ech:A
16 2xkb:C 389 40 0.1319 0.0488 0.4750 0.44 2xkb:L
17 7l1i:A 169 115 0.1944 0.1657 0.2435 0.63
18 6ktb:B 138 46 0.1042 0.1087 0.3261 1.1
19 3q5f:A 141 89 0.1597 0.1631 0.2584 1.4 3q5f:B
20 3lgd:A 482 57 0.0972 0.0290 0.2456 1.5 3lgd:B, 3lgg:A, 3lgg:B
21 4aij:B 142 86 0.1458 0.1479 0.2442 1.8 4aij:A, 4aik:A
22 6o5c:A 215 34 0.0903 0.0605 0.3824 2.1 6o5c:B
23 3j4s:A 414 23 0.1042 0.0362 0.6522 2.3 3m89:A, 2xka:A, 2xka:B, 2xka:C, 2xka:D, 2xka:E, 2xka:F, 2xka:G, 2xkb:A, 2xkb:B, 2xkb:D, 2xkb:E, 2xkb:F, 2xkb:G, 2xkb:I, 2xkb:J, 2xkb:K
24 7ase:a 70 33 0.0972 0.2000 0.4242 2.4 5opt:a
25 3zpl:E 160 119 0.1597 0.1437 0.1933 2.4 3zpl:A, 3zpl:B, 3zpl:F
26 5t96:B 330 73 0.1389 0.0606 0.2740 2.6 5t96:A, 5t96:C, 5t96:D, 5t96:E, 5t96:F
27 5cvi:B 215 33 0.1042 0.0698 0.4545 3.0 5cvi:A
28 3gfi:A 143 84 0.1736 0.1748 0.2976 3.1 3gez:A, 3gfj:A, 3gfl:A, 3gfm:A, 2yr2:B
29 2p5v:G 158 30 0.0556 0.0506 0.2667 4.9 2p5v:A, 2p5v:B, 2p5v:C, 2p5v:E, 2p5v:D, 2p5v:F, 2p5v:H, 2p6s:A, 2p6s:G, 2p6s:B, 2p6s:D, 2p6s:C, 2p6s:F, 2p6s:E, 2p6s:H, 2p6t:A, 2p6t:G, 2p6t:B, 2p6t:D, 2p6t:C, 2p6t:F, 2p6t:E, 2p6t:H
30 8iyk:L 232 30 0.0903 0.0560 0.4333 5.0 8iyk:N, 8iyk:f, 8iyl:L, 8iyl:G, 8iyl:d, 8k35:J, 8k35:G, 8k35:N, 8xcg:L, 8xcg:N, 8xcg:f
31 1elr:A 128 35 0.0764 0.0859 0.3143 5.7 3esk:A, 3fwv:A, 3fwv:B
32 7r81:a2 71 60 0.1250 0.2535 0.3000 5.9 7olc:SZ, 7old:SZ, 8oo0:SZ, 7z3n:SZ, 7z3o:SZ
33 4y9j:B 593 55 0.1597 0.0388 0.4182 6.6 4y9j:A, 4y9l:A, 4y9l:B
34 2x4h:C 131 27 0.0764 0.0840 0.4074 6.8 2x4h:A, 2x4h:B, 2x4h:D
35 5ffj:B 1232 42 0.0972 0.0114 0.3333 7.1
36 5ffj:A 1044 42 0.0972 0.0134 0.3333 8.5
37 5eqn:A 270 38 0.0694 0.0370 0.2632 9.7 5eqn:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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