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BioLiP
>protein
SLAKVWMYASWIPRGIPKAMANELSSAAAALAHPEAIARVAQLESQGKNPYRVARAEFWQMYLACWPYRFRNTVVEWETC
KAKVLKGSVDLQDIVDLLYLLAWAYLFWILGEIYGRGSLYGYRFDGEIHRQEAQNVILYKEKEAQEMAVVMEKLEKEIQE
WLKTME

The query sequence (length=166) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 6tdu:M 166 166 1.0000 1.0000 1.0000 1.39e-121 6tdu:m, 6tdv:M, 6tdv:m
2 6hyp:A 2272 108 0.1325 0.0097 0.2037 1.1
3 7cfs:A 426 56 0.0964 0.0376 0.2857 2.9 7cfs:B, 7cfs:C, 6cmc:A, 4ntw:A, 4ntx:A, 2qts:C, 2qts:B, 2qts:A, 2qts:D, 2qts:E, 2qts:F, 6x9h:A, 6x9h:B, 6x9h:C
4 3w0l:B 598 39 0.0783 0.0217 0.3333 3.8 3w0l:D
5 2f5x:B 300 43 0.0904 0.0500 0.3488 5.3 2f5x:A, 2f5x:C
6 3egd:B 731 57 0.1145 0.0260 0.3333 5.4 3egx:B, 8hr0:B, 2nup:B, 2nut:B, 5vne:B, 5vnf:B, 5vng:B, 5vnh:B, 5vni:B, 5vnj:B, 5vnk:B, 5vnl:B, 5vnm:B, 5vnn:B, 5vno:B
7 6szw:C 186 33 0.0723 0.0645 0.3636 6.2 6szw:A, 6szw:B
8 4ce5:A 325 43 0.0843 0.0431 0.3256 8.9 4ce5:B, 8x1f:A, 8x1f:B, 7xg5:A, 7xg5:B, 8xiy:A, 8xiy:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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