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●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
SKVFKSTIAPEEKLRYIGNHKQAFDIEPLYPLALFEEFVATTGDCIIECSGKIKQDQLYPARIDLQFSDKHHFHNIHTSI
DFLKRAASRTDVNLNLDILATFLAGNFDYSKVQNILAGIDLRQNLGESKLKLFIRIGDYPAKMAVAKHLCNITPESEAML
RSDTLHIGFDFYLDGRSAIELYPELKKDEFNHPFIYNQLKTILSPEALKPLPLCNLFGIGLANVLYYGLENIEDFLSYFP
INDTARRVHDFYLQQEGSRRMTVALSESEMKAGRINNVNLYYSKAFTSQ

The query sequence (length=289) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 7vmw:A 296 294 0.9931 0.9696 0.9762 0.0 8je4:A, 8je4:B, 7vmy:A, 7vmy:B
2 6pgn:A 297 284 0.4325 0.4209 0.4401 2.82e-72 5tu4:A, 5tu5:A, 5tu6:A
3 8ye0:C 290 277 0.3599 0.3586 0.3755 2.81e-61 8ye0:A, 8ye0:B, 8ye0:D
4 7yll:A 329 54 0.0623 0.0547 0.3333 0.045
5 4hxv:A 317 57 0.0519 0.0473 0.2632 0.73 4o7i:A
6 3u57:A 471 41 0.0484 0.0297 0.3415 3.9 4atl:A, 4atl:B, 4ek7:A, 4ek7:B, 3u57:B, 3u5y:A, 3u5y:B, 3zj6:A, 3zj6:B
7 5eks:A 355 81 0.0900 0.0732 0.3210 4.4 5eks:B
8 2vtb:A 500 172 0.1419 0.0820 0.2384 5.1 2ijg:X, 2j4d:A, 2j4d:B, 2vtb:B, 2vtb:C, 2vtb:D, 2vtb:E, 2vtb:F
9 5ho2:A 803 42 0.0450 0.0162 0.3095 6.2 5ho0:A, 5ho9:A, 5ho9:B, 5hof:A, 5hon:A, 5hon:B, 5hp6:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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