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BioLiP
>protein
SKTIVLSVGEATRTLTEIQSTRQIFEEKVGPLVGRLRLTASLRQNGAKTAYRVNLKLDQADVVDSGLPKVRYTQVWSHDV
TIVANSTEASRKSLYDLTKSLVATSQVEDLVVNLVPLGR

The query sequence (length=119) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 8tux:ab 127 127 0.9832 0.9213 0.9213 1.05e-76 2qux:A, 2qux:B, 2qux:E, 2qux:D, 2qux:G, 2qux:H, 2qux:J, 2qux:K, 2qux:M, 2qux:N, 2qux:P, 2qux:Q
2 6yfk:AO 137 100 0.2605 0.2263 0.3100 0.007 6yfk:BG, 6yfk:AU, 6yfk:AC
3 8hkx:AS5P 204 51 0.1597 0.0931 0.3725 0.044 8hky:AS5P, 8hkz:AS5P, 8hl1:AS5P, 8hl2:AS5P, 8hl3:AS5P, 8hl4:AS5P, 8hl5:AS5P, 8wkp:AS5P, 8wq2:AS5P, 8wq4:AS5P
4 8opr:A 651 60 0.1345 0.0246 0.2667 0.79
5 4glr:H 229 71 0.1597 0.0830 0.2676 0.93 4glr:J
6 4onf:H 212 92 0.1933 0.1085 0.2500 6.2 4ong:H
7 7pkq:o 163 48 0.1176 0.0859 0.2917 6.7
8 7phf:B 270 62 0.1765 0.0778 0.3387 9.2

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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