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●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
SKTITLYLDPASLPALNQLMDFTQNNEDKTHPRIFGLSRFKIPDNIITQYQNIHFVELKDNRPTEALFTILDQYPGNIEL
NIHLNIAHSVQLIRPILAYRFKHLDRVSIQQLNLYDDGSMEYVDLEKEENKDISAEIKQAEKQLSHYLLTGKIKFDNPTI
ARYVWQSAFPVKYHFLSTDYFEKAEFLQPLKEYLAENYQKMDWTAYQQLTPEQQAFYLTLVGFNDEVKQSLEVQQAKFIF
TGTTTWEGNTEVREYYAQQQLNLLNHFTQAEGDLFIGDHYKIYFKGHPRGGEINDYILNNAKNITNIPANISFEVLMMTG
LLPDKVGGVASSLYFSLPKEKISHIIFTNNPYVKVMRRLGIIDESQVIFWDSLKELG

The query sequence (length=377) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 2ii6:A 393 388 0.9894 0.9491 0.9613 0.0 2c84:A, 2ex1:A, 2ihj:A, 2ihk:A, 2ihz:A, 2iib:A, 2iiq:A, 2iiq:B, 2ilv:A, 2iy7:A, 2iy8:A, 3s44:A, 8sv2:A
2 4v3b:A 388 388 0.7825 0.7603 0.7603 0.0 4v3c:A
3 4r83:A 474 393 0.3873 0.3080 0.3715 6.87e-76 4r83:B, 4r83:C, 4r83:D, 4r84:A, 4r84:B, 4r84:C, 4r84:D, 4r9v:A
4 2z4t:A 493 395 0.3714 0.2840 0.3544 7.61e-75
5 2zwi:B 373 388 0.3024 0.3056 0.2938 4.32e-35 2zwi:A
6 6wtf:A 542 63 0.0584 0.0406 0.3492 0.89 6wtf:B
7 6wte:A 567 63 0.0584 0.0388 0.3492 0.90 6wte:B
8 2mqq:A 215 127 0.0716 0.1256 0.2126 3.8
9 2aqs:A 160 35 0.0318 0.0750 0.3429 4.4 2aqn:A, 2aqn:B, 2aqn:C, 2aqp:A, 2aqp:B, 2aqq:A, 2aqq:B, 2aqq:C, 2aqr:A, 2aqr:B, 2aqr:C, 2aqs:B, 2aqt:C, 2aqt:B, 2aqt:A
10 4rel:A 446 82 0.0637 0.0538 0.2927 4.7 4rem:A, 4ren:A, 4whm:A
11 2gbw:A 449 89 0.0610 0.0512 0.2584 5.6 2ckf:A, 2gbw:C, 2gbw:E, 2gbx:A, 2gbx:C, 2gbx:E
12 3bq5:A 709 41 0.0345 0.0183 0.3171 6.2
13 1t7l:A 734 41 0.0345 0.0177 0.3171 6.5 3bq5:B, 3bq6:A, 3bq6:B, 1t7l:B, 1xdj:A, 1xdj:B, 1xpg:A, 1xpg:B, 1xr2:A, 1xr2:B
14 8wa1:c 1176 55 0.0371 0.0119 0.2545 6.7
15 4arn:B 273 50 0.0424 0.0586 0.3200 6.8 4arr:A, 4arr:B
16 1n6o:A 170 45 0.0318 0.0706 0.2667 8.4 7bl1:DDD, 1huq:A, 4kyi:B, 4kyi:D, 4kyi:F, 4kyi:H, 3mjh:A, 3mjh:C, 1n6h:A, 1n6i:A, 1n6k:A, 1n6l:A, 1n6n:A, 1n6p:A, 1n6r:A, 1r2q:A, 1tu3:A, 1tu3:B, 1tu3:C, 1tu3:D, 1tu3:E, 1tu4:A, 1tu4:B, 1tu4:C, 1tu4:D, 1z07:A, 1z0d:A, 1z0d:C
17 3qqc:A 381 91 0.0610 0.0604 0.2527 9.4

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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