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●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
SKSTAEIRQAFLDFFHSKGHQVVASSSLVPHNDPTLLFTNAGMNQFKDVFLGLDKRNYSRATTSQRCVRAGGKHNDLENV
GYTARHHTFFEMLGNFSFGDYFKLDAILFAWLLLTSEKWFALPKERLWVTVYESDDEAYEIWEKEVGIPRERIIRIGDNK
GAPYASDNFWQMGDTGPCGPCTEIFYDHGDHIWGGPPGSPEEDGDRYIEIWNIVFMQFNRQADGTMEPLPKPSVDTAMGL
ERIAAVLQHVNSNYDIDLFRTLIQAVAKVTGATDLSNKSLRVIADHIRSCAFLIADGVMPSNENRGYVLRRIIRRAVRHG
NMLGAKETFFYKLVGPLIDVMGSAGEDLKRQQAQVEQVLKTEEEQFARTLERGLALLDEELAKLSGDTLDGETAFRLYDT
YGFPVDLTADVCRERNIKVDEAGFEAAMEEQRRRAREASGF

The query sequence (length=441) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 3hxu:A 441 441 0.9977 0.9977 0.9977 0.0 3hxv:A, 3hxw:A, 3hxx:A, 3hxy:A, 3hxz:A, 3hxz:B, 3hxz:C, 3hxz:D, 3hy0:A, 3hy0:B, 3hy1:A
2 1yfr:A 448 448 0.5351 0.5268 0.5268 2.47e-164 1yfr:B, 1yfs:A, 1yfs:B, 1ygb:A
3 5knn:A 450 465 0.4898 0.4800 0.4645 7.61e-130 5knn:B, 5knn:C, 5knn:D, 5knn:E, 5knn:F, 5knn:G, 5knn:H, 5v59:A, 4xem:A, 4xeo:A, 4xeo:B
4 2zze:A 744 480 0.2630 0.1559 0.2417 4.13e-25 2zze:B, 2zzf:A, 2zzg:A, 2zzg:B
5 3wqy:A 905 469 0.2540 0.1238 0.2388 2.25e-21 3wqy:B, 3wqz:A, 3wqz:B, 2ztg:A
6 1vrg:A 515 37 0.0295 0.0252 0.3514 0.28 1vrg:B, 1vrg:C, 1vrg:D, 1vrg:E, 1vrg:F
7 1htt:A 366 38 0.0363 0.0437 0.4211 2.0 1htt:B, 1htt:C, 1htt:D, 1kmm:B, 1kmm:D, 1kmn:B, 1kmn:D
8 1kmm:C 387 38 0.0363 0.0413 0.4211 2.1 2el9:A, 2el9:B, 2el9:C, 2el9:D, 1kmm:A, 1kmn:A, 1kmn:C
9 2h7f:X 314 72 0.0408 0.0573 0.2500 3.1 2h7g:X, 3igc:A
10 4ix3:B 350 77 0.0544 0.0686 0.3117 3.2 4ix3:A, 4ix4:A, 4ix4:B, 4ix5:A, 4ix5:B, 4ix6:A, 4ix6:B
11 7lu4:B 977 53 0.0476 0.0215 0.3962 4.0
12 3rgl:A 292 24 0.0295 0.0445 0.5417 7.2 3rgl:B, 3ufg:A, 3ufg:B
13 8fmw:AU 115 42 0.0340 0.1304 0.3571 7.9 8fn2:U
14 3nbx:X 481 49 0.0385 0.0353 0.3469 7.9 6q7l:V, 6q7l:W, 6q7l:X, 6q7l:Y, 6q7l:Z, 6q7m:V, 6q7m:W, 6q7m:X, 6q7m:Y, 6q7m:Z, 6sza:B, 6sza:C, 6sza:A, 6sza:D, 6sza:E, 6sza:F, 6szb:D, 6szb:E, 6szb:C, 6szb:B, 6szb:A, 6szb:F
15 8snb:8K 322 48 0.0363 0.0497 0.3333 8.8
16 5abs:A 66 38 0.0272 0.1818 0.3158 8.9
17 1zrm:A 220 31 0.0249 0.0500 0.3548 9.1

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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