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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
SKSLQKPTILNVETVARSRLFTVESVDLEFSNGVRRVYERMRPTNREAVMIVPIVDDHLILIREYAVGTESYELGFSKGL
IDPGESVYEAANRELKEEVGFGANDLTFLKKLSMAPSYFSSKMNIVVAQDLYPESLEGDEPEPLPQVRWPLAHMMDLLED
PDFNEARNVSALFLVREWLKGQGRV

The query sequence (length=185) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 1vhz:A 186 184 0.9946 0.9892 1.0000 2.55e-135 1vhz:B
2 5c7t:A 182 182 0.2324 0.2363 0.2363 9.39e-10 5c7t:B, 5c8l:A, 5c8l:B
3 1v8m:A 159 107 0.1892 0.2201 0.3271 4.98e-09 1v8l:A, 1v8r:A, 1v8s:A, 1v8t:A, 1v8v:A, 1v8y:A, 3x0k:A, 3x0l:A, 3x0m:A, 3x0n:A, 3x0o:A, 3x0p:A, 3x0q:A, 3x0r:A
4 3bm4:A 197 150 0.1946 0.1827 0.2400 3.20e-08 3ac9:A, 3ac9:B, 3aca:A, 3aca:B, 3bm4:B, 2dsc:A, 2dsc:B, 2dsd:A, 2dsd:B, 6gru:A, 6gru:B, 6gru:C, 6gru:D, 3l85:A, 3l85:B, 5nqr:A, 5nqr:B, 5nwh:A, 5nwh:B, 8ptt:A, 8ptt:B, 8ptt:C, 8ptt:D, 5qj4:A, 5qj4:B, 5qj4:C, 5qj4:D, 5qj5:A, 5qj5:B, 5qj5:C, 5qj5:D, 5qj6:A, 5qj6:B, 5qj6:C, 5qj6:D, 5qj7:A, 5qj7:B, 5qj7:C, 5qj7:D, 5qj8:A, 5qj8:B, 5qj8:C, 5qj9:A, 5qj9:B, 5qj9:C, 5qj9:D, 5qja:A, 5qja:B, 5qja:C, 5qja:D, 5qjb:A, 5qjb:B, 5qjb:C, 5qjb:D, 5qjc:A, 5qjc:B, 5qjc:C, 5qjc:D, 5qjd:A, 5qjd:B, 5qjd:C, 5qjd:D, 5qje:A, 5qje:B, 5qje:C, 5qje:D, 5qjf:A, 5qjf:B, 5qjf:C, 5qjf:D, 5qjg:A, 5qjg:B, 5qjg:C, 5qjg:D, 5qjh:A, 5qjh:B, 5qjh:C, 5qji:A, 5qji:B, 5qji:C, 5qji:D, 5qjj:A, 5qjj:B, 5qjj:C, 5qjj:D, 5qjk:A, 5qjk:B, 5qjk:C, 5qjk:D, 5qjl:A, 5qjl:B, 5qjl:C, 5qjl:D, 5qjm:A, 5qjm:B, 5qjm:C, 5qjm:D, 5qjn:A, 5qjn:B, 5qjn:C, 5qjo:A, 5qjo:B, 5qjo:C, 5qjo:D, 5qjp:A, 5qjp:B, 5qjp:C, 5qjp:D, 5qjq:A, 5qjq:B, 5qjq:C, 5qjq:D, 5qjr:A, 5qjr:B, 5qjr:C, 5qjr:D, 5qjs:A, 5qjs:B, 5qjs:C, 5qjs:D, 5qjt:A, 5qjt:B, 5qjt:C, 5qjt:D, 5qju:A, 5qju:B, 5qju:C, 5qju:D, 5qjv:A, 5qjv:B, 5qjv:C, 5qjv:D, 5qjw:A, 5qjw:B, 5qjw:C, 5qjw:D, 5qjx:A, 5qjx:B, 5qjx:C, 5qjx:D, 5qjy:A, 5qjy:B, 5qjy:C, 5qjy:D, 5qjz:A, 5qjz:B, 5qjz:C, 5qjz:D, 5qk0:A, 5qk0:B, 5qk0:C, 5qk0:D, 5qk1:A, 5qk1:B, 5qk1:C, 5qk1:D, 5qk2:A, 5qk2:B, 5qk2:C, 5qk2:D, 5qk3:A, 5qk3:B, 5qk3:C, 5qk3:D, 5qk4:A, 5qk4:B, 5qk4:C, 5qk4:D, 5qk5:A, 5qk5:B, 5qk5:C, 5qk5:D, 5qk6:A, 5qk6:B, 5qk6:C, 5qk6:D, 5qk7:A, 5qk7:B, 5qk7:C, 5qk7:D, 5qk8:A, 5qk8:B, 5qk8:C, 5qk8:D, 5qk9:A, 5qk9:B, 5qk9:C, 5qk9:D, 5qka:A, 5qka:B, 5qka:C, 5qka:D, 5qkb:A, 5qkb:B, 5qkb:C, 5qkb:D, 5qtl:A, 5qtl:B, 5qtl:C, 5qtl:D, 5qtm:A, 5qtm:B, 5qtm:C, 5qtm:D, 5qtn:A, 5qtn:B, 5qtn:C, 5qtn:D, 5qto:A, 5qto:B, 5qto:C, 5qto:D, 5qtp:A, 5qtp:B, 5qtp:C, 5qtp:D, 5qtq:A, 5qtq:B, 5qtq:C, 5qtq:D, 5qtr:A, 5qtr:B, 5qtr:C, 5qtr:D, 5qts:A, 5qts:B, 5qts:C, 5qts:D, 8rdz:A, 8rdz:C, 8rdz:B, 8rdz:D, 8riy:AAA, 8riy:BBB
5 2yvm:A 182 102 0.1892 0.1923 0.3431 1.37e-05 2yvo:A, 2yvp:A
6 4mpo:B 148 139 0.2000 0.2500 0.2662 5.24e-04 4mpo:A, 4mpo:C, 4mpo:D, 4mpo:E, 4mpo:F, 4mpo:G, 4mpo:H
7 6vcr:A 161 111 0.1892 0.2174 0.3153 0.001 6d1v:B, 4s2x:A, 4s2y:A, 7sp3:A, 6vck:B, 6vcl:B, 6vcm:B, 6vcn:A, 6vco:A, 6vcp:A, 6vcq:A
8 4s2v:A 139 42 0.1027 0.1367 0.4524 0.003
9 1mqw:A 200 88 0.1622 0.1500 0.3409 0.010 1mk1:A, 1mqe:A, 1mr2:A
10 1ppx:A 129 65 0.1135 0.1628 0.3231 0.011 3a6t:A, 3a6u:A, 3a6v:A, 3a6v:B, 1pun:A, 1puq:A, 1pus:A, 1tum:A, 7ww5:A, 7ww6:A, 7ww7:A, 7ww8:A, 7ww9:A, 7wwa:A, 7x9h:A, 7x9i:A, 7x9j:A, 7x9k:A, 7x9l:A, 7x9n:A, 7x9o:A
11 1g9q:A 205 173 0.2541 0.2293 0.2717 0.049 1g9q:B, 1khz:B, 1khz:A
12 1ktg:A 137 30 0.0811 0.1095 0.5000 0.067 1ktg:B
13 4hvy:A 135 40 0.0811 0.1111 0.3750 0.085
14 9b21:A 205 138 0.1892 0.1707 0.2536 0.16 9b20:A, 9b20:B, 9b21:B, 9b22:A, 9b22:B
15 2qkm:B 266 30 0.0811 0.0564 0.5000 0.20 5j3t:B, 5kq4:E, 5kq4:B, 5n2v:B, 5n2v:E, 2qkm:F
16 6ypf:A 129 123 0.1676 0.2403 0.2520 0.20
17 2c0c:A 353 54 0.0973 0.0510 0.3333 0.21 2c0c:B, 2wek:A, 2wek:B, 2x1h:A, 2x1h:B, 2x7h:A, 2x7h:B, 7zej:A, 7zej:B
18 5gp0:I 139 129 0.1892 0.2518 0.2713 0.29 6dbz:A, 6dbz:B, 6fl4:A, 6fl4:B, 5gp0:E, 5gp0:F, 5gp0:A, 5wwd:A, 5wwd:B
19 1xsc:A 153 73 0.1135 0.1373 0.2877 0.30 4ick:B, 4ijx:A, 4ijx:B
20 1vc8:A 126 31 0.0919 0.1349 0.5484 0.33 1vc8:B, 1vc9:A, 1vc9:B
21 3i7v:A 134 54 0.1081 0.1493 0.3704 0.67 3i7v:B
22 5qoh:A 149 31 0.0703 0.0872 0.4194 0.77 5qoi:A, 5qoj:A, 5qok:A, 5qom:A, 5qon:A, 5qoo:A, 5qop:A, 5qoq:A, 5qor:A, 5qos:A, 5qot:A, 5qou:A, 5qov:A, 5qow:A, 5qox:A, 5qoy:A, 5qoz:A, 5qp0:A, 5qp1:A, 5qp2:A, 5qp3:A, 5qp4:A, 5qp5:A, 5qp6:A, 5qp7:A, 5qp8:A, 5qp9:A, 5qpa:A, 5qpb:A
23 1q33:A 292 84 0.1135 0.0719 0.2500 0.84 1qvj:A
24 6o3p:B 320 31 0.0595 0.0344 0.3548 1.1
25 6scx:A 328 31 0.0595 0.0335 0.3548 1.3 6o3p:A, 6scx:B, 6scx:C
26 6y3z:A 243 38 0.0865 0.0658 0.4211 1.6
27 4nfw:F 153 32 0.0703 0.0850 0.4062 2.4 4nfw:A, 4nfw:B, 4nfw:C, 4nfw:D, 4nfw:E, 4nfw:G, 4nfw:H, 4nfw:J, 4nfw:K, 3shd:A, 3shd:B, 3shd:C, 3shd:D, 3shd:E, 3shd:F, 3shd:G, 3shd:H, 3shd:I, 3shd:J, 3shd:K, 3shd:L
28 3ffu:A 133 57 0.1135 0.1579 0.3684 2.4 3ef5:A, 3ef5:B, 3ffu:B
29 4zbp:C 262 80 0.1027 0.0725 0.2375 2.8
30 8hbf:A 522 45 0.0865 0.0307 0.3556 5.0 7d9r:A, 7d9s:A, 7d9u:A, 8hbh:A, 6jt2:A
31 5zrk:A 129 23 0.0649 0.0930 0.5217 5.4 5zrg:A, 5zrh:A, 5zri:A, 5zrk:B, 5zrl:A, 5zrl:B, 5zro:A, 5zro:B
32 2gb5:A 265 79 0.1081 0.0755 0.2532 5.6 7e44:A, 7e44:B, 7e44:E, 7e44:F, 2gb5:B, 5isy:A, 5isy:C, 5iw4:A, 5iw4:B, 5iw5:B, 5iw5:A, 1vk6:A
33 3r03:A 131 46 0.0865 0.1221 0.3478 6.1
34 4jzt:A 158 34 0.0757 0.0886 0.4118 6.3 4jzu:A, 4jzv:A, 4jzv:B
35 4xac:A 245 48 0.0865 0.0653 0.3333 6.4
36 5iy6:C 275 33 0.0595 0.0400 0.3333 7.5 8a3y:C, 7b0y:C, 8b3d:C, 8b3f:C, 7b7u:C, 8bvw:C, 8byq:C, 8bz1:C, 6drd:C, 7edx:q, 7eg7:q, 7eg8:q, 7eg9:q, 7ega:q, 7egb:q, 7egc:q, 7ena:PC, 7enc:PC, 6exv:C, 6gmh:C, 6gml:C, 8gxq:PC, 8gxs:PC, 5iy7:C, 5iy8:C, 5iy9:C, 5iya:C, 5iyb:C, 5iyc:C, 7lbm:C, 7nvr:C, 7nvs:C, 7nvt:C, 7nvu:C, 7nvy:C, 7nvz:C, 7nw0:C, 8oeu:C, 8oev:C, 8oew:C, 8of0:C, 7okx:C, 7oky:C, 7ol0:C, 7oo3:C, 7oob:C, 7oop:C, 7opc:C, 7opd:C, 7ozn:C, 7ozn:O, 7ozo:C, 7ozo:O, 7ozp:C, 7ozp:O, 8p4a:C, 8p4b:C, 8p4e:C, 7pks:C, 8rbx:C, 8s51:C, 8s52:C, 8s54:C, 8s55:C, 8s5n:C, 6ted:C, 8uha:C, 8uhd:C, 8uhg:C, 8ui0:C, 8uis:C, 7unc:C, 7und:C, 8w8e:C, 8w8f:C, 8wak:q, 8wal:q, 8wan:q, 8wao:q, 8wap:q, 8waq:q, 8war:q, 8was:q, 8wat:q, 8wau:q, 8wav:q, 8waw:q, 8wax:q, 8way:q, 8waz:q, 8wb0:q, 7ycx:3, 7zwd:C, 7zx7:C, 7zx8:C
37 4lfl:B 172 63 0.0757 0.0814 0.2222 7.7 4lfl:D, 4lfm:B, 4lfm:D, 4lfn:B, 4lfn:D
38 7wua:A 603 77 0.1243 0.0381 0.2987 7.8 7wua:B, 7wua:C, 7wua:D
39 7syc:A 122 42 0.0811 0.1230 0.3571 8.7
40 3n6r:A 591 39 0.0757 0.0237 0.3590 9.3 3n6r:C, 3n6r:E
41 4qsz:A 686 40 0.0649 0.0175 0.3000 9.8 8j25:A, 8j2p:E, 8j2p:A, 4kyc:A, 4qsz:B, 4qu2:A, 4qu2:B
42 5otn:A 156 87 0.1243 0.1474 0.2644 9.8 5hzx:A, 5hzx:B
43 3n6r:G 646 39 0.0757 0.0217 0.3590 9.9 3n6r:I, 3n6r:K

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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