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BioLiP
>protein
SKSKMIVRTKFIDRACHWTVVICFFLVALSGISFFFPTLQWLTQTFGTPQMGRILHPFFGIAIFVALMFMFVRFVHHNIP
DKKDIPWLLNIVEVLKGNEHKVADVGKYNAGQKMMFWSIMSMIFVLLVTGVIIWRPYFAQYFPMQVVRYSLLIHAAAGII
LIHAILIHMYMAFWVKGSIKGMIEGKVSRRWAKKHHPRWYREIEKAEAKKESEEGI

The query sequence (length=216) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 1kqf:C 216 216 1.0000 1.0000 1.0000 9.15e-161 1kqg:C
2 1rq5:A 602 127 0.1389 0.0498 0.2362 0.65
3 8bdc:A 963 130 0.1296 0.0291 0.2154 1.5 8bdc:B, 8bdc:C, 8bdc:D
4 5h2c:A 251 46 0.0741 0.0637 0.3478 2.5
5 6gi5:B 271 93 0.1065 0.0849 0.2473 3.5 6gi1:A, 6gi1:B, 6gi2:A, 6gi2:B, 6gi5:A
6 6inw:B 390 70 0.0833 0.0462 0.2571 5.2 6inw:A, 6iv7:A, 6iv7:B, 6ix3:A, 6ix3:B, 6ix5:A, 6ix5:B, 6ix7:A, 6ix7:B, 6ix8:A, 6ix8:B, 6ix9:A, 6ix9:B, 6j1o:A, 6j1o:B, 6j24:B, 6j24:A, 6j46:A, 6j46:B, 5zzd:A, 5zzd:B
7 3afl:A 766 15 0.0463 0.0131 0.6667 5.4
8 7w55:R 303 105 0.1111 0.0792 0.2286 6.4 7w57:R, 7xk8:R

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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