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TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
SKQPMTPFEAIGGEQCIEILVDTFYSYVSKHPDLSPIFPDDLTETARKQKQFLTQYLGGPNLYTEEHGHPMLRARHLPFE
ITPKRAEALLSCMEQAMDDTGVHGHIREFVFERLALTAQHMVNTPNETGEI

The query sequence (length=131) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 5v3u:A 131 131 1.0000 1.0000 1.0000 3.98e-97 5v3t:A, 5v3t:B, 5v3u:B, 5v3v:A, 5v3v:B
2 2bkm:A 128 125 0.6641 0.6797 0.6960 4.18e-60 2bkm:B
3 1ux8:A 118 118 0.6565 0.7288 0.7288 4.86e-58
4 4uzv:A 129 125 0.3664 0.3721 0.3840 1.95e-26 2bmm:A
5 5d1v:A 121 118 0.3740 0.4050 0.4153 1.17e-25 5d1v:B
6 2xyk:B 130 126 0.3664 0.3692 0.3810 3.38e-24 2xyk:A
7 1ngk:B 127 126 0.3359 0.3465 0.3492 2.73e-23 1ngk:A, 1ngk:C, 1ngk:D, 1ngk:E, 1ngk:F, 1ngk:G, 1ngk:H, 1ngk:I, 1ngk:J, 1ngk:K, 1ngk:L, 2qrw:A, 2qrw:B, 2qrw:C, 2qrw:D, 2qrw:E, 2qrw:F, 2qrw:G, 2qrw:H, 2qrw:I, 2qrw:J, 2qrw:K, 2qrw:L
8 4uur:A 124 121 0.2977 0.3145 0.3223 6.36e-19 4uur:B
9 4c0n:A 150 96 0.2672 0.2333 0.3646 3.87e-12 4c44:A
10 4nk2:A 164 114 0.2366 0.1890 0.2719 3.09e-08 4nk1:A, 4nk1:B, 4nk2:B
11 4xdi:A 127 57 0.1603 0.1654 0.3684 1.07e-07 6cii:A, 4xdi:B
12 1s56:B 135 71 0.1908 0.1852 0.3521 1.36e-07 5ab8:A, 2gkm:A, 2gkm:B, 2gkn:A, 2gkn:B, 2gl3:A, 2gl3:B, 2gln:A, 2gln:B, 1idr:A, 1idr:B, 1rte:A, 1rte:B, 1s56:A, 1s61:A, 1s61:B
13 1dlw:A 116 102 0.1756 0.1983 0.2255 5.13e-06 1uvy:A
14 3aq5:A 117 90 0.1985 0.2222 0.2889 9.83e-06 3aq5:B, 3aq6:A, 3aq6:B, 3aq7:A, 3aq7:B, 3aq8:A, 3aq8:B, 3aq9:A, 3aq9:B
15 2hz1:A 123 95 0.2214 0.2358 0.3053 2.85e-05 2hz2:A, 2hz3:A, 1mwb:A, 1rtx:A, 1s69:A, 1s6a:A
16 1dly:A 121 94 0.1985 0.2149 0.2766 1.87e-04 1uvx:A
17 2ksc:A 123 59 0.1145 0.1220 0.2542 0.009 4l2m:A, 4l2m:B, 4max:A, 4max:B, 4max:C
18 2ig3:A 127 132 0.2519 0.2598 0.2500 0.014 2ig3:B
19 6td7:A 126 124 0.2366 0.2460 0.2500 0.21
20 8tls:A 116 97 0.2137 0.2414 0.2887 0.33 8tls:B, 7tt9:A, 7tt9:B, 7tt9:C, 7tt9:D, 8ugz:A, 8ugz:B, 8ugz:C, 8ugz:D, 8uzu:A, 8uzu:B, 8uzu:C, 8uzu:D, 8vij:A, 8vij:B, 8vij:C, 8vij:D, 8vsh:A, 8vsh:B, 8vsh:C, 8vsh:D, 8w3a:A, 8w3a:B, 8w3a:C, 8w3a:D
21 1qjs:A 408 34 0.1069 0.0343 0.4118 1.2 1qhu:A, 1qjs:B
22 3ck5:A 357 42 0.1221 0.0448 0.3810 1.5 3ck5:B, 3ck5:C, 3ck5:D
23 6bme:A 127 54 0.1374 0.1417 0.3333 1.6 6bme:B
24 5xmj:C 212 65 0.1450 0.0896 0.2923 2.2 5xmj:G, 5xmj:K, 5xmj:O
25 4dyk:A 437 70 0.1374 0.0412 0.2571 4.2 4dyk:B, 4gbd:A, 4gbd:B
26 2l51:A 102 19 0.0687 0.0882 0.4737 5.5 2l51:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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