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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
SKPYVVIDIETDGLDEKKNTIIEIGAVKFNGQQVEEFNALIKYEEKLPPTIFKLTGISKSLLDQEGRDLKEVLSEFLLFI
GDLTLVGYNIHFDIQFINNKLNKFGLPLLINKTHDIMRYVKDEKLFLDNYQLQTALKSYGIEDSVPHRALKDARLIYHLS
TKVNKFLARMKE

The query sequence (length=172) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 8h18:A 172 171 0.9942 0.9942 1.0000 8.49e-123 8h2f:A
2 8fyc:K 164 163 0.5058 0.5305 0.5337 3.26e-55
3 5m1s:D 229 102 0.1919 0.1441 0.3235 2.15e-05 2gui:A, 2ido:A, 2ido:C, 1j53:A, 1j54:A, 2xy8:A
4 8bvt:A 508 70 0.1221 0.0413 0.3000 0.14 8bvs:A, 8bw7:A, 8sdz:A
5 3dgb:A 371 48 0.0930 0.0431 0.3333 0.35 3ct2:A, 3ct2:B, 3fj4:A, 3fj4:B
6 6sty:A 198 116 0.1686 0.1465 0.2500 0.41 6j7y:B, 6j7z:B, 6j80:B, 6n6i:A, 6n6i:B, 6n6j:A, 6n6j:B, 6n6k:A, 6n6k:B, 6rcl:A, 6rcn:A, 6sty:B, 6sty:E
7 3j7a:U 149 36 0.0872 0.1007 0.4167 0.62 3jbn:U, 3jbo:U, 3jbp:U, 6okk:U, 8tpu:SU
8 8sbg:A 456 44 0.1047 0.0395 0.4091 1.0
9 3v9x:B 212 23 0.0640 0.0519 0.4783 1.3 4kaz:A, 4kb0:A, 4kb0:B, 4kb1:A, 4kb1:B, 3ngy:D, 3ngy:A, 3ngy:B, 3ngz:A, 3ngz:B, 3nh0:A, 3nh0:B, 3nh1:A, 3nh1:B, 3nh1:C, 3nh1:D, 3nh2:A, 3nh2:B, 3nh2:F, 3nh2:E, 3v9s:A, 3v9s:B, 3v9u:A, 3v9u:B, 3v9u:C, 3v9u:D, 3v9w:A, 3v9w:B, 3v9w:C, 3v9w:D, 3v9x:A, 3v9x:C, 3v9x:D, 3v9z:A, 3v9z:B, 3va0:A, 3va0:B, 3va3:A, 3va3:B
10 5e4r:A 466 49 0.1047 0.0386 0.3673 1.5 4xdz:A, 4xdz:B
11 6rcl:B 148 106 0.1453 0.1689 0.2358 3.3 6j7y:A, 6j7z:A, 6j80:A, 6rcn:B
12 3dzv:A 265 54 0.1163 0.0755 0.3704 3.8 3dzv:B
13 3kfu:F 447 61 0.0930 0.0358 0.2623 3.9 3kfu:I
14 3glv:B 122 60 0.0988 0.1393 0.2833 7.2
15 5abs:A 66 32 0.0640 0.1667 0.3438 7.3
16 3tr8:A 184 28 0.0581 0.0543 0.3571 7.8 3tr8:B
17 3sub:A 139 45 0.0988 0.1223 0.3778 8.0 3sub:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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