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BioLiP
>protein
SKPRILLMGLRRSGKSSIQKVVFHNSSFVNFQIWEMIFRGTGALIYVIDAQDDYMEALTRLHITVSKAYKVNPDMNFEVF
IHKVDGLSDDHKIETQRDIHQRANDDLADAGLEKLHLSFYLTSIYDHSIFEAFSKVVQKLIPQLPTLENLLNIFISNSGI
EKAFLFDVVSKIYIATDSSPVDMQSYELCCDMIDVVIDVSCIYGLKEDGSGSAYDKESMAIIKLNNTTVLYLKEVTKFLA
LVCILREESFERKGLIDYNFHCFRKAIHEVFEV

The query sequence (length=273) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 6s6d:C 284 283 0.9963 0.9577 0.9611 0.0
2 6ulg:G 310 309 0.9963 0.8774 0.8803 0.0 8dhb:A, 3llu:A, 6nzd:G, 2q3f:A, 2q3f:B, 6s6a:C, 6s6a:D, 6s6d:D, 6sb0:D, 6sb0:J, 6sb2:D, 6sb2:J, 7t3b:E, 7t3c:E, 6u62:C, 7ux2:C, 7ux2:J, 7uxc:E, 7uxc:L, 7uxh:G, 7uxh:N, 7uxh:W, 7uxh:d, 6wj2:G, 6wj3:G
3 8fw5:E 285 287 0.6190 0.5930 0.5889 1.22e-118
4 4arz:B 304 309 0.5018 0.4507 0.4434 3.32e-85 6jwp:B, 3r7w:B, 3r7w:D
5 8fw5:D 301 221 0.2161 0.1960 0.2670 3.03e-10
6 6nzd:F 227 173 0.1758 0.2115 0.2775 6.27e-10
7 6ces:A 300 215 0.2051 0.1867 0.2605 9.63e-10 8dhb:B, 6s6a:A, 6s6a:B, 6s6d:A, 6s6d:B, 6sb0:C, 6sb0:I, 6sb2:C, 6sb2:I, 7t3a:K, 7t3b:D, 7t3c:D, 7t3c:K, 6u62:B, 6ulg:F, 7ux2:B, 7ux2:I, 7uxc:D, 7uxc:K, 7uxh:F, 7uxh:M, 7uxh:V, 7uxh:c, 6wj2:F, 6wj3:F
8 4arz:A 291 229 0.1941 0.1821 0.2314 4.82e-07 6jwp:A, 6jwp:F, 3r7w:A, 3r7w:C
9 7rll:B 177 83 0.0916 0.1412 0.3012 0.13 7rll:A
10 3aq4:A 170 83 0.0879 0.1412 0.2892 0.27 3aq4:B
11 4y0v:A 165 72 0.0733 0.1212 0.2778 0.80 4y0v:B, 4ylg:A, 4ylg:B
12 3o47:A 289 73 0.0769 0.0727 0.2877 1.2 4c0a:C, 4c0a:D, 4c0a:G, 4c0a:H, 6cm9:C, 6cm9:H, 6cri:C, 6cri:H, 6cri:K, 6cri:U, 6cri:L, 6cri:V, 6d83:C, 6d83:H, 6d84:C, 6d84:H, 6d84:I, 6d84:N, 6dff:C, 6dff:H, 7dn8:D, 7dn8:B, 7dn8:F, 7dn8:H, 7dn9:B, 7dn9:D, 7dn9:F, 7dn9:H, 3dwd:A, 3dwd:B, 4hmy:C, 6ii6:C, 6ii6:D, 1j2j:A, 2j59:A, 2j59:B, 2j59:C, 2j59:D, 2j59:E, 2j59:F, 7mge:E, 1o3y:A, 1o3y:B, 3o47:B, 8p50:B, 7r4h:C, 7r4h:H, 1r8q:A, 1r8q:B, 1r8s:A, 1re0:A, 1rrf:A, 1rrg:A, 1rrg:B, 1s9d:A, 8sdw:A, 1u81:A, 7wqy:A, 7wqy:B
13 6pta:A 165 73 0.0733 0.1212 0.2740 1.2 6pta:B, 6pta:C, 6pta:D, 5uf8:A, 5uf8:B, 5uf8:C
14 9bh5:CX 119 65 0.0733 0.1681 0.3077 2.3 9cai:CX
15 5uf8:D 160 74 0.0696 0.1187 0.2568 2.4
16 8oun:A 181 45 0.0476 0.0718 0.2889 3.8 8oum:A, 8oum:B, 8oum:C, 8oum:D, 8oum:E, 8oun:B
17 2b6h:A 171 73 0.0733 0.1170 0.2740 4.2
18 2fna:A 352 19 0.0440 0.0341 0.6316 4.4 2fna:B
19 5de3:A 166 78 0.0879 0.1446 0.3077 4.6 5di3:A
20 3lrp:A 181 92 0.0879 0.1326 0.2609 4.8
21 6a8d:A 181 78 0.0696 0.1050 0.2436 5.1
22 7sl4:A 786 104 0.0916 0.0318 0.2404 5.5 8dtm:B
23 2b3x:A 888 65 0.0659 0.0203 0.2769 5.8 2b3y:A, 2b3y:B
24 7sl6:A 819 104 0.0916 0.0305 0.2404 6.0 7mqs:F, 7mqs:E, 7sl1:A, 7sl1:B, 7sl2:A, 7sl2:B, 7sl6:B, 7sl7:A, 7sl7:B
25 2x77:A 181 80 0.0769 0.1160 0.2625 6.0 2x77:B
26 1dek:A 241 56 0.0696 0.0788 0.3393 6.5 1dek:B, 1del:A, 1del:B
27 3lvq:E 420 90 0.0916 0.0595 0.2778 7.0 2b0o:E, 2b0o:F, 2b0o:G, 2b0o:H, 3lvr:E
28 8d4c:C 180 78 0.0733 0.1111 0.2564 7.1 8d4c:H, 8d4c:D, 8d4c:F, 8d4d:C, 8d4d:H, 8d4d:D, 8d4d:F, 8d4e:C, 8d4e:H, 8d4e:Z, 8d4f:C, 8d4f:H, 8d4f:Z, 8d4f:D, 8d4f:F, 8d4f:Q, 8d4g:C, 8d4g:H, 8d4g:Z, 8d4g:D, 8d4g:F, 8d4g:Q, 8d9r:C, 8d9r:H, 8d9r:Z, 8d9r:J, 8d9r:X, 8d9r:3, 8d9r:K, 8d9r:a, 8d9r:4, 8d9r:O, 8d9r:b, 8d9r:5, 8d9r:P, 8d9r:c, 8d9r:6, 8d9r:Q, 8d9r:d, 8d9r:7, 8d9s:C, 8d9s:H, 8d9s:Z, 8d9s:J, 8d9s:X, 8d9s:3, 8d9s:K, 8d9s:a, 8d9s:4, 8d9s:O, 8d9s:b, 8d9s:5, 8d9s:P, 8d9s:c, 8d9s:6, 8d9s:Q, 8d9s:d, 8d9s:7, 8d9t:C, 8d9t:H, 8d9t:J, 8d9t:X, 8d9t:K, 8d9t:Z, 8d9t:O, 8d9t:a, 8d9t:P, 8d9t:b, 8d9t:Q, 8d9t:c, 8d9u:C, 8d9u:H, 8d9u:J, 8d9u:X, 8d9u:K, 8d9u:Z, 8d9u:O, 8d9u:a, 8d9u:P, 8d9u:b, 8d9u:Q, 8d9u:c, 8d9v:C, 8d9v:H, 8d9v:D, 8d9v:F, 8d9w:F, 8d9w:I, 1hur:A, 1hur:B, 7ux3:C, 7ux3:H
29 6ij9:D 388 140 0.1099 0.0773 0.2143 7.1
30 6ija:A 415 140 0.1099 0.0723 0.2143 10.0 6ij9:A, 6ij9:B, 6ij9:C, 6ija:B, 6ijd:A, 6ijd:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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